Punchlist for: Clone-contig misorientation
Chromosome: 1
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 1:1953506-2309776 | scaffold5284:104550-460820 in wrong orientation according to WI_MRC-RH | 1 |
| 1:3019936-3310979 | scaffold3356:8980-300023 in wrong orientation according to MGI | 1 |
| 1:10986695-12107733 | scaffold5097.0:535650-1656688 in wrong orientation according to MGI | 1 |
| 1:12637317-13814260 | scaffold3319.1:1-1176944 in wrong orientation according to MGI | 1 |
| 1:15055556-15721455 | scaffold1866:1-665900 in wrong orientation according to MGI | 1 |
| 1:18753639-19144212 | scaffold1915:185800-576373 in wrong orientation according to WI_MRC-RH | 1 |
| 1:21124198-21188058 | scaffold3055.0:459272-522672 in wrong orientation according to WI_MRC-RH | 3 |
| 1:24536353-24830979 | scaffold712:1-294627 in wrong orientation according to WI_MRC-RH | 1 |
| 1:25997636-26133214 | scaffold712:1445503-1581081 in wrong orientation according to MGI | 1 |
| 1:35292327-35847917 | scaffold2980.0:1-555591 in wrong orientation according to MGI | 1 |
| 1:36628445-37606064 | scaffold3349.1:794310-1771929 in wrong orientation according to MGI | 1 |
| 1:39983514-40042858 | scaffold3360.0:1291752-1351096 in wrong orientation according to WI_MRC-RH | 1 |
| 1:42670181-43141719 | scaffold21602:1-471539 in wrong orientation according to WI_MRC-RH | 1 |
| 1:43811382-44040364 | scaffold3192.1:1066989-1295971 in wrong orientation according to WI_MRC-RH | 1 |
| 1:45646456-46959240 | scaffold3192.0:1-1312785 in wrong orientation according to MGI | 1 |
| 1:46959252-47206427 | scaffold10319:1-247176 in wrong orientation according to WI_MRC-RH | 1 |
| 1:47529335-47834130 | scaffold12836:1-304796 in wrong orientation according to WI_MRC-RH | 1 |
| 1:61780562-62015223 | scaffold2213:648945-883606 in wrong orientation according to WI_MRC-RH | 1 |
| 1:65822378-65951034 | scaffold8928:1-127277 in wrong orientation according to MGI | 3 |
| 1:66031982-66038210 | C1465883:1-6229 in wrong orientation according to WI_MRC-RH | 1 |
| 1:70043730-70665730 | scaffold8893.1:1-622001 in wrong orientation according to MGI | 1 |
| 1:70672670-71193574 | scaffold8893.1:622002-1142906 in wrong orientation according to WI_MRC-RH | 1 |
| 1:79146209-79584721 | scaffold2721:669356-1107868 in wrong orientation according to MGI | 1 |
| 1:80310505-80922730 | scaffold7673:1-612226 in wrong orientation according to MGI | 1 |
| 1:83917863-84667739 | scaffold4936:1-749877 in wrong orientation according to MGI | 1 |
| 1:84759187-84942624 | scaffold411.1:1-183438 in wrong orientation according to MGI | 1 |
| 1:90071226-90844376 | scaffold2503:1-773151 in wrong orientation according to WI_MRC-RH | 1 |
| 1:91977140-92881338 | scaffold310.1:1-904199 in wrong orientation according to WI_MRC-RH | 1 |
| 1:97900637-98301714 | scaffold3346.1:89590-488386 in wrong orientation according to MGI | 3 |
| 1:99539953-100690261 | scaffold1101:1-1157042 in wrong orientation according to MGI | 2 |
| 1:110167409-111247654 | scaffold2144.0:1-1080246 in wrong orientation according to WI_MRC-RH | 1 |
| 1:120516828-121317081 | scaffold5042:151224-952215 in wrong orientation according to MGI | 2 |
| 1:137567313-138107662 | scaffold4147.1:1-540350 in wrong orientation according to MGI | 1 |
| 1:138107674-138153874 | scaffold43346:1-46201 in wrong orientation according to WI_MRC-RH | 1 |
| 1:138197310-138913228 | scaffold5710.1:42470-758388 in wrong orientation according to MGI | 1 |
| 1:138913240-139394266 | scaffold80:1108472-1589498 in wrong orientation according to MGI | 1 |
| 1:141358883-141571377 | scaffold2085.0:644461-856955 in wrong orientation according to MGI | 1 |
| 1:149288397-149311228 | scaffold19507:19080-41911 in wrong orientation according to WI_MRC-RH | 1 |
| 1:149466970-150062135 | scaffold9052:89729-684894 in wrong orientation according to MGI | 1 |
| 1:150062147-150634401 | scaffold4266.1:454-572708 in wrong orientation according to MGI | 1 |
| 1:150714031-150935281 | scaffold25711:1-221251 in wrong orientation according to WI_MRC-RH | 1 |
| 1:150936462-150992065 | scaffold511.0:356287-411890 in wrong orientation according to WI_MRC-RH | 1 |
| 1:157672301-157993714 | scaffold2068.1:7127-328540 in wrong orientation according to WI_MRC-RH | 1 |
| 1:158694420-159218055 | scaffold1795.1:627095-1150730 in wrong orientation according to WI_MRC-RH | 1 |
| 1:164577374-165017672 | scaffold322.0:725151-1165449 in wrong orientation according to WI_MRC-RH | 1 |
| 1:165017990-165603973 | scaffold322.0:139167-725150 in wrong orientation according to MGI | 1 |
| 1:173670855-174354685 | scaffold2170:625804-1309634 in wrong orientation according to MGI | 1 |
| 1:174715595-174917656 | scaffold2170:95232-297293 in wrong orientation according to WI_MRC-RH | 1 |
| 1:174917896-175013126 | scaffold2170:1-95231 in wrong orientation according to WI_MRC-RH | 1 |
| 1:177082930-177487969 | scaffold1113:1932690-2332532 in wrong orientation according to WI_MRC-RH | 7 |
| 1:178356999-178835225 | scaffold5378.0:1-478227 in wrong orientation according to MGI | 1 |
| 1:181433385-182183878 | scaffold271.3:1-750494 in wrong orientation according to MGI | 1 |
| 1:185467786-185747537 | scaffold3150.0:562756-842507 in wrong orientation according to WI_MRC-RH | 1 |
| 1:190537231-190957799 | scaffold2701:220967-641535 in wrong orientation according to MGI | 1 |
| 1:191179063-191528567 | scaffold5086.0:27001-376505 in wrong orientation according to MGI | 1 |
| 1:191665788-192153233 | scaffold10400:1-487446 in wrong orientation according to MGI | 1 |
| 1:192153683-192585648 | scaffold13026.0:538317-970282 in wrong orientation according to MGI | 1 |
| 1:193254575-193684329 | scaffold7274:1-429755 in wrong orientation according to WI_MRC-RH | 1 |
| 1:193813919-194448245 | scaffold2274.1:451-634777 in wrong orientation according to MGI | 1 |
| 1:195197842-195286903 | scaffold2204.0:746616-835677 in wrong orientation according to WI_MRC-RH | 1 |
| 1:195287679-195546302 | scaffold2204.2:1-258624 in wrong orientation according to WI_MRC-RH | 1 |
| 1:197089826-197265165 | scaffold4509:1-175340 in wrong orientation according to MGI | 1 |
| 1:198614463-198904406 | scaffold1685:1027787-1317730 in wrong orientation according to MGI | 1 |
| 1:201401780-203136118 | scaffold582:1-1734339 in wrong orientation according to MGI | 1 |
| 1:203874781-204195516 | scaffold1320.0:2136-322871 in wrong orientation according to MGI | 1 |
| 1:206727135-207197063 | scaffold6136.0:624722-1094769 in wrong orientation according to WI_MRC-RH | 2 |
| 1:207908509-208468530 | scaffold12141:310693-870714 in wrong orientation according to WI_MRC-RH | 1 |
| 1:208469227-208779918 | scaffold12141:1-310692 in wrong orientation according to MGI | 1 |
| 1:208780790-208913694 | scaffold15363.0:1-132905 in wrong orientation according to WI_MRC-RH | 1 |
| 1:209281543-209688740 | scaffold2913.0:1-407198 in wrong orientation according to MGI | 1 |
| 1:217403362-219099489 | scaffold4663.1:405-1704819 in wrong orientation according to MGI | 2 |
Chromosome: 10
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 10:18675069-19161789 | scaffold3074:1-490420 in wrong orientation according to WI_MRC-RH | 2 |
| 10:19267866-19923032 | scaffold3074:591388-1246554 in wrong orientation according to WI_MRC-RH | 1 |
| 10:20410021-20683855 | scaffold833:1-273835 in wrong orientation according to MGI | 1 |
| 10:35361343-35478842 | scaffold4669.0:23977-141476 in wrong orientation according to WI_MRC-RH | 1 |
| 10:35479507-36148615 | scaffold3333:1-669109 in wrong orientation according to MGI | 1 |
| 10:43875536-44110555 | scaffold18489:1-235020 in wrong orientation according to WI_MRC-RH | 1 |
| 10:44110567-44914075 | scaffold6836:1-803509 in wrong orientation according to MGI | 1 |
| 10:45095500-46003799 | scaffold11.0:177426-1085725 in wrong orientation according to WI_MRC-RH | 1 |
| 10:46281087-46559764 | scaffold15076:1-278678 in wrong orientation according to MGI | 1 |
| 10:47076346-47259239 | scaffold7055:1-182894 in wrong orientation according to WI_MRC-RH | 1 |
| 10:47855168-48183569 | scaffold7055:775001-1103402 in wrong orientation according to MGI | 1 |
| 10:48184116-48605315 | scaffold7055:1106396-1527595 in wrong orientation according to MGI | 1 |
| 10:61627676-62022664 | scaffold332.3:1-394989 in wrong orientation according to MGI | 1 |
| 10:68303870-68658789 | scaffold2305:656613-1011532 in wrong orientation according to WI_MRC-RH | 1 |
| 10:74585376-74798314 | scaffold6907.0:1-212939 in wrong orientation according to MGI | 1 |
| 10:78699594-78927397 | scaffold5390.1:709474-937277 in wrong orientation according to WI_MRC-RH | 1 |
| 10:80724642-81497380 | scaffold2600.1:93093-865831 in wrong orientation according to MGI | 1 |
| 10:83918685-84084507 | scaffold250.0:251895-417717 in wrong orientation according to WI_MRC-RH | 1 |
| 10:90824870-91217320 | scaffold865:1-392451 in wrong orientation according to WI_MRC-RH | 1 |
| 10:91863920-92398826 | scaffold3218:2459244-2994150 in wrong orientation according to MGI | 1 |
| 10:95097509-95794916 | scaffold18190:1-697408 in wrong orientation according to MGI | 1 |
| 10:95974274-96213519 | scaffold16341.1:1-239246 in wrong orientation according to WI_MRC-RH | 1 |
| 10:99783017-100867015 | scaffold592:693345-1777343 in wrong orientation according to MGI | 1 |
| 10:106161354-106857780 | scaffold2215.1:17330-713756 in wrong orientation according to MGI | 1 |
| 10:108349708-108606536 | scaffold5195:268908-525736 in wrong orientation according to MGI | 1 |
| 10:123909915-124551788 | scaffold9173.0:1-641874 in wrong orientation according to MGI | 1 |
| 10:124584835-125091878 | scaffold31433:1-507044 in wrong orientation according to MGI | 1 |
| 10:125091991-125672078 | scaffold20426:1-580088 in wrong orientation according to MGI | 1 |
| 10:128770624-129506310 | scaffold705.0:1-735687 in wrong orientation according to MGI | 1 |
| 10:129506478-129808070 | scaffold7891.0:92683-394275 in wrong orientation according to WI_MRC-RH | 1 |
| 10:136699207-136936056 | scaffold2098.1:665677-902526 in wrong orientation according to WI_MRC-RH | 1 |
| 10:138199479-139263646 | scaffold18:56903-1123599 in wrong orientation according to WI_MRC-RH | 2 |
| 10:143622742-144029451 | scaffold173:1-406710 in wrong orientation according to WI_MRC-RH | 1 |
| 10:144073501-144353400 | scaffold141.1:305-280204 in wrong orientation according to WI_MRC-RH | 1 |
| 10:144354052-144495567 | scaffold141.1:280249-421764 in wrong orientation according to WI_MRC-RH | 1 |
| 10:144912955-145070165 | scaffold16426:254719-410826 in wrong orientation according to WI_MRC-RH | 3 |
| 10:145231619-145465774 | scaffold26018:1-234156 in wrong orientation according to MGI | 1 |
Chromosome: 11
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 11:97100-260310 | scaffold2785:37977-201187 in wrong orientation according to WI_MRC-RH | 1 |
| 11:759718-918071 | scaffold6261.1:81978-240331 in wrong orientation according to WI_MRC-RH | 1 |
| 11:1002167-1335946 | scaffold15748:1-333780 in wrong orientation according to MGI | 1 |
| 11:1871803-2969248 | scaffold2120.1:41236-1138681 in wrong orientation according to MGI | 1 |
| 11:2969323-3624589 | scaffold4180:1-655267 in wrong orientation according to MGI | 1 |
| 11:6398042-6929305 | scaffold4828:1-531264 in wrong orientation according to MGI | 1 |
| 11:21567517-21722977 | scaffold10932:688291-843751 in wrong orientation according to MGI | 1 |
| 11:22241341-23406900 | scaffold2808.1:1-1165560 in wrong orientation according to MGI | 1 |
| 11:23683547-24141378 | scaffold2767:1-457832 in wrong orientation according to WI_MRC-RH | 1 |
| 11:30949265-31265034 | scaffold9672:8681-324450 in wrong orientation according to WI_MRC-RH | 1 |
| 11:32820554-33166644 | scaffold9927:1-346091 in wrong orientation according to WI_MRC-RH | 1 |
| 11:34728627-35315834 | scaffold1004.0:645889-1233096 in wrong orientation according to WI_MRC-RH | 1 |
| 11:49521592-49942471 | scaffold5483:150527-571406 in wrong orientation according to WI_MRC-RH | 1 |
| 11:50954687-51480980 | scaffold2108.1:1-526294 in wrong orientation according to WI_MRC-RH | 1 |
| 11:51524482-52005957 | scaffold2896.0:1-480978 in wrong orientation according to MGI | 3 |
| 11:52773873-53090565 | scaffold4568.0:41885-358577 in wrong orientation according to WI_MRC-RH | 1 |
| 11:54080758-54220469 | scaffold43332:1-139712 in wrong orientation according to WI_MRC-RH | 1 |
| 11:54938558-55553126 | scaffold1795.0:32289-646857 in wrong orientation according to WI_MRC-RH | 1 |
| 11:55852700-56355391 | scaffold8985:48750-551441 in wrong orientation according to MGI | 1 |
| 11:56355870-56844216 | scaffold8985:551442-1039788 in wrong orientation according to MGI | 1 |
| 11:56951039-57220727 | scaffold31984:1-269689 in wrong orientation according to MGI | 1 |
| 11:57252486-58022490 | scaffold8407:1-770005 in wrong orientation according to MGI | 1 |
| 11:58792236-59915605 | scaffold4265.2:1-1118149 in wrong orientation according to MGI | 3 |
| 11:60882970-60947132 | scaffold1477.1:1-64163 in wrong orientation according to MGI | 1 |
| 11:60947864-61629157 | scaffold1477.1:64164-745457 in wrong orientation according to MGI | 1 |
| 11:63270776-63523283 | scaffold686.1:1342070-1597049 in wrong orientation according to WI_MRC-RH | 4 |
| 11:63575784-63871443 | scaffold5507:323536-619195 in wrong orientation according to WI_MRC-RH | 1 |
| 11:63938583-64055666 | scaffold5507:149226-266309 in wrong orientation according to MGI | 1 |
| 11:66449876-66796073 | scaffold277.1:2049779-2395976 in wrong orientation according to WI_MRC-RH | 1 |
| 11:68032933-68167674 | scaffold9372.0:633558-768299 in wrong orientation according to WI_MRC-RH | 1 |
| 11:68564359-68813876 | scaffold9372.0:1-249518 in wrong orientation according to WI_MRC-RH | 1 |
| 11:68813888-69814548 | scaffold377.0:1-1000661 in wrong orientation according to MGI | 1 |
| 11:77516830-77694099 | scaffold13326.0:58754-237211 in wrong orientation according to MGI | 2 |
| 11:81299980-81922842 | scaffold9808:55194-678056 in wrong orientation according to MGI | 1 |
| 11:82578027-83173933 | scaffold16538:331798-927704 in wrong orientation according to MGI | 1 |
| 11:83443936-83758194 | scaffold5459.1:269356-583614 in wrong orientation according to MGI | 1 |
| 11:83776461-84763049 | scaffold11747:1-986589 in wrong orientation according to MGI | 1 |
| 11:87010738-87536999 | scaffold3105.0:1-526262 in wrong orientation according to MGI | 1 |
| 11:87537604-88010508 | scaffold3105.0:526270-1001959 in wrong orientation according to MGI | 3 |
| 11:91070875-91087346 | scaffold19401:1-16472 in wrong orientation according to WI_MRC-RH | 1 |
| 11:91110885-92489073 | scaffold13349:1-1378189 in wrong orientation according to MGI | 1 |
| 11:92489095-93213638 | scaffold1990.1:319-724862 in wrong orientation according to MGI | 1 |
| 11:95694137-95965699 | scaffold3957.1:1-270551 in wrong orientation according to WI_MRC-RH | 3 |
| 11:96272984-97384514 | scaffold3140.1:37204-1148734 in wrong orientation according to MGI | 1 |
| 11:103614367-103828151 | scaffold5799.1:993464-1207248 in wrong orientation according to WI_MRC-RH | 1 |
| 11:103828998-104042949 | scaffold5799.1:1207249-1421200 in wrong orientation according to MGI | 1 |
| 11:104317096-104813997 | scaffold1888.3:1-496902 in wrong orientation according to MGI | 1 |
| 11:106002027-106752214 | scaffold8975.1:1-750188 in wrong orientation according to MGI | 1 |
| 11:108374087-108678481 | scaffold12593:1-304395 in wrong orientation according to MGI | 1 |
| 11:109045105-109684848 | scaffold18608:33175-672918 in wrong orientation according to MGI | 1 |
| 11:110458518-111522360 | scaffold12469.1:327-1069979 in wrong orientation according to MGI | 2 |
| 11:111876337-112406998 | scaffold4551.0:1-530662 in wrong orientation according to MGI | 1 |
| 11:112407010-112954735 | scaffold23883:1-547726 in wrong orientation according to MGI | 1 |
| 11:114902260-114990007 | scaffold39.1:667469-755216 in wrong orientation according to WI_MRC-RH | 1 |
| 11:114991385-115255556 | scaffold39.1:400169-664340 in wrong orientation according to MGI | 1 |
| 11:115662944-116245586 | scaffold10926:1-582643 in wrong orientation according to WI_MRC-RH | 1 |
| 11:116687563-116884056 | scaffold3227.2:1-196494 in wrong orientation according to MGI | 1 |
| 11:116884068-117420619 | scaffold10974:1-536552 in wrong orientation according to MGI | 1 |
| 11:117696310-117975593 | scaffold4617.0:1-283863 in wrong orientation according to WI_MRC-RH | 2 |
| 11:118521245-119560065 | scaffold3221.1:430102-1468922 in wrong orientation according to MGI | 1 |
| 11:120616089-121352673 | scaffold978:481045-1217629 in wrong orientation according to WI_MRC-RH | 1 |
| 11:121658591-121835263 | scaffold978:1-176673 in wrong orientation according to MGI | 1 |
| 11:123106773-123624543 | scaffold5941.2:42326-560096 in wrong orientation according to MGI | 1 |
| 11:123890701-124622019 | scaffold7049.1:1-731319 in wrong orientation according to MGI | 1 |
| 11:124622297-125238393 | scaffold7122:342564-959814 in wrong orientation according to MGI | 4 |
| 11:126713145-127593312 | scaffold1978.3:1-880168 in wrong orientation according to MGI | 1 |
| 11:127845306-128308744 | scaffold1164.0:1-463439 in wrong orientation according to MGI | 1 |
| 11:129515924-130780887 | scaffold310.2:1-1264964 in wrong orientation according to MGI | 1 |
| 11:131118428-131560246 | scaffold5489.0:448078-889896 in wrong orientation according to MGI | 1 |
| 11:132449637-132876447 | scaffold7173.0:18029-444839 in wrong orientation according to MGI | 1 |
Chromosome: 12
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 12:40890-280850 | scaffold5024:579513-819473 in wrong orientation according to WI_MRC-RH | 1 |
| 12:699675-864013 | scaffold5024:1-164339 in wrong orientation according to WI_MRC-RH | 1 |
| 12:5709465-5996650 | scaffold5510:1-287186 in wrong orientation according to WI_MRC-RH | 1 |
| 12:6571705-6629335 | scaffold6432.1:352970-410600 in wrong orientation according to WI_MRC-RH | 1 |
| 12:9082740-9427502 | scaffold3882.0:171103-515865 in wrong orientation according to MGI | 1 |
| 12:10250228-10714319 | scaffold740:999810-1463901 in wrong orientation according to MGI | 1 |
| 12:19895770-20193079 | scaffold1062:1-297310 in wrong orientation according to WI_MRC-RH | 1 |
| 12:23676631-24439210 | scaffold3483.1:151432-914011 in wrong orientation according to WI_MRC-RH | 1 |
| 12:25508561-25537932 | scaffold3483.1:1986179-2015550 in wrong orientation according to WI_MRC-RH | 1 |
| 12:28720766-30304287 | scaffold377.1:1-1583522 in wrong orientation according to WI_MRC-RH | 1 |
| 12:30311288-30433163 | scaffold920.3:99132-221007 in wrong orientation according to WI_MRC-RH | 1 |
| 12:30532406-32341288 | scaffold5196.0:1-1808883 in wrong orientation according to MGI | 1 |
| 12:32529807-33066940 | scaffold15572:93102-630235 in wrong orientation according to MGI | 1 |
| 12:35053461-35321475 | scaffold5516.0:1-268015 in wrong orientation according to MGI | 1 |
| 12:35321487-35816080 | scaffold12862:1-501068 in wrong orientation according to MGI | 2 |
| 12:41231732-41988868 | scaffold6344:1-759793 in wrong orientation according to MGI | 2 |
| 12:46012309-46656384 | scaffold3409:1-644076 in wrong orientation according to WI_MRC-RH | 1 |
| 12:55046119-55427908 | scaffold1018:1426887-1810390 in wrong orientation according to WI_MRC-RH | 2 |
| 12:55559159-56417237 | scaffold1018:439261-1297339 in wrong orientation according to WI_MRC-RH | 1 |
| 12:60562251-60910538 | scaffold1943.0:1-348288 in wrong orientation according to WI_MRC-RH | 1 |
| 12:63606504-63808183 | scaffold4790.1:27243-228922 in wrong orientation according to MGI | 1 |
| 12:71481465-72027654 | scaffold8695.0:1-546190 in wrong orientation according to WI_MRC-RH | 1 |
| 12:75507873-75868091 | scaffold2656.0:514808-875026 in wrong orientation according to MGI | 1 |
| 12:76342667-76489253 | scaffold2656.4:197270-343856 in wrong orientation according to MGI | 1 |
| 12:76954764-77110988 | scaffold4854.0:1-156225 in wrong orientation according to WI_MRC-RH | 1 |
| 12:79080986-79556507 | scaffold21036:1-475522 in wrong orientation according to MGI | 1 |
| 12:84712506-84924603 | scaffold2891.2:1-212098 in wrong orientation according to WI_MRC-RH | 1 |
| 12:87848514-88077512 | scaffold7617.1:1-228999 in wrong orientation according to WI_MRC-RH | 1 |
| 12:88077753-89323501 | scaffold13076:1-1245749 in wrong orientation according to MGI | 1 |
| 12:92855026-93237605 | scaffold4552:1105255-1487834 in wrong orientation according to WI_MRC-RH | 1 |
| 12:101069905-101391766 | scaffold7173.4:334008-655869 in wrong orientation according to WI_MRC-RH | 1 |
| 12:101725191-101763331 | scaffold13164.1:57812-95952 in wrong orientation according to WI_MRC-RH | 1 |
| 12:101824681-102115750 | scaffold5232:1-291070 in wrong orientation according to WI_MRC-RH | 1 |
| 12:109545208-110151081 | scaffold199.1:1-605874 in wrong orientation according to WI_MRC-RH | 1 |
| 12:110152624-110567976 | scaffold20694:1-415353 in wrong orientation according to WI_MRC-RH | 1 |
| 12:123501213-123770398 | scaffold18220:1-269186 in wrong orientation according to WI_MRC-RH | 1 |
| 12:124330861-125062673 | scaffold2696:618794-1350606 in wrong orientation according to MGI | 1 |
| 12:126940114-127138657 | scaffold1190.1:1250151-1448694 in wrong orientation according to MGI | 1 |
Chromosome: 13
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 13:89841-404061 | scaffold6620:1-314221 in wrong orientation according to WI_MRC-RH | 1 |
| 13:2896871-3584313 | scaffold3733.1:1-687657 in wrong orientation according to MGI | 2 |
| 13:7796817-8329601 | scaffold297:1072618-1605402 in wrong orientation according to WI_MRC-RH | 1 |
| 13:9489348-9638511 | scaffold12844.1:235-149398 in wrong orientation according to MGI | 1 |
| 13:12306627-12957657 | scaffold5843.1:1-651031 in wrong orientation according to MGI | 1 |
| 13:18058655-18861815 | scaffold4523.1:31516-834676 in wrong orientation according to MGI | 1 |
| 13:20075005-20369193 | scaffold1070:830731-1121443 in wrong orientation according to WI_MRC-RH | 3 |
| 13:22005899-22082252 | scaffold4710.0:265892-342245 in wrong orientation according to WI_MRC-RH | 1 |
| 13:22885507-22998066 | scaffold2302:796667-907809 in wrong orientation according to WI_MRC-RH | 3 |
| 13:23124552-23706168 | scaffold5330:1-581617 in wrong orientation according to WI_MRC-RH | 1 |
| 13:27594164-27598725 | scaffold3580:110516-115077 in wrong orientation according to WI_MRC-RH | 1 |
| 13:31867688-32400792 | scaffold3882.1:1-533105 in wrong orientation according to MGI | 1 |
| 13:34696854-34703799 | C1480729:1-6946 in wrong orientation according to WI_MRC-RH | 1 |
| 13:37172723-38575011 | scaffold785.3:1-1402289 in wrong orientation according to MGI | 1 |
| 13:43676152-45589321 | scaffold8241:1-1917282 in wrong orientation according to MGI | 2 |
| 13:48597069-49426400 | scaffold5440:1-829332 in wrong orientation according to MGI | 1 |
| 13:50401227-51980436 | scaffold2996:95943-1675152 in wrong orientation according to MGI | 1 |
| 13:53312703-53425360 | scaffold24312:253844-366501 in wrong orientation according to WI_MRC-RH | 1 |
| 13:55106725-55572972 | scaffold1300.0:1-466248 in wrong orientation according to MGI | 1 |
| 13:55745936-55955636 | scaffold4679:1584472-1794172 in wrong orientation according to WI_MRC-RH | 1 |
| 13:64050065-64170467 | scaffold3895:1-120403 in wrong orientation according to MGI | 1 |
| 13:64416502-64648047 | scaffold12734:1-231546 in wrong orientation according to WI_MRC-RH | 1 |
| 13:67622244-68316363 | scaffold253:1022869-1716988 in wrong orientation according to MGI | 1 |
| 13:70775719-70920430 | scaffold7665:134922-279633 in wrong orientation according to WI_MRC-RH | 1 |
| 13:75686866-77445692 | scaffold2891.1:1-1758827 in wrong orientation according to MGI | 1 |
| 13:77574384-78730714 | scaffold664:128413-1284743 in wrong orientation according to MGI | 1 |
| 13:80070712-80737044 | scaffold1086.1:435038-1101967 in wrong orientation according to MGI | 2 |
| 13:83401957-83710101 | scaffold524.1:223105-531249 in wrong orientation according to MGI | 1 |
| 13:89647984-90249738 | scaffold909:416676-1018430 in wrong orientation according to MGI | 1 |
| 13:92541993-92622023 | scaffold1335.0:62107-142137 in wrong orientation according to WI_MRC-RH | 1 |
| 13:97492968-97843176 | scaffold814.4:271784-621992 in wrong orientation according to WI_MRC-RH | 1 |
| 13:100771620-100988776 | scaffold8540:406329-623485 in wrong orientation according to MGI | 1 |
| 13:100999419-101396385 | scaffold8540:1-396967 in wrong orientation according to MGI | 1 |
| 13:102503167-103388788 | scaffold5851:391860-1277481 in wrong orientation according to MGI | 1 |
| 13:103605609-103780378 | scaffold5851:1-174770 in wrong orientation according to MGI | 1 |
| 13:107187227-107519392 | scaffold4642.1:202689-534854 in wrong orientation according to WI_MRC-RH | 1 |
| 13:108045051-108381860 | scaffold4354:245372-582181 in wrong orientation according to WI_MRC-RH | 1 |
| 13:109525122-109546247 | scaffold4354:1723381-1744506 in wrong orientation according to MGI | 1 |
| 13:109594262-109621906 | scaffold4354:1714321-1750047 in wrong orientation according to MGI | 6 |
| 13:109642323-109678753 | scaffold19268:1-36431 in wrong orientation according to MGI | 1 |
| 13:115066017-115518500 | scaffold1182.1:501037-953520 in wrong orientation according to MGI | 1 |
| 13:123899086-124095510 | scaffold7662.1:7967-204391 in wrong orientation according to WI_MRC-RH | 1 |
| 13:130558017-130898343 | scaffold750:3064187-3404513 in wrong orientation according to WI_MRC-RH | 1 |
| 13:131336897-131566036 | scaffold750:3829693-4065299 in wrong orientation according to WI_MRC-RH | 2 |
Chromosome: 14
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 14:123896-989688 | scaffold13022:1-867719 in wrong orientation according to MGI | 2 |
| 14:4062812-5052567 | scaffold8306:1-989756 in wrong orientation according to MGI | 1 |
| 14:14068990-14240177 | scaffold6907.1:1-171188 in wrong orientation according to WI_MRC-RH | 1 |
| 14:20895270-21251642 | scaffold1818:2501294-2857666 in wrong orientation according to WI_MRC-RH | 1 |
| 14:23782376-24646656 | scaffold363.1:1-864281 in wrong orientation according to WI_MRC-RH | 1 |
| 14:24646724-26652073 | scaffold2488.1:194045-2199394 in wrong orientation according to MGI | 1 |
| 14:26848508-26941205 | scaffold31653:1-92698 in wrong orientation according to MGI | 1 |
| 14:29337906-30150795 | scaffold2504.0:744108-1562484 in wrong orientation according to MGI | 2 |
| 14:41264280-41923700 | scaffold1088:1-659421 in wrong orientation according to WI_MRC-RH | 1 |
| 14:48804698-49387377 | scaffold3699:1-582680 in wrong orientation according to MGI | 1 |
| 14:51108868-52351610 | scaffold9359:25405-1270544 in wrong orientation according to MGI | 2 |
| 14:52938158-53434637 | scaffold22665:10467-506946 in wrong orientation according to MGI | 1 |
| 14:53656121-53893839 | scaffold2545:1-221785 in wrong orientation according to MGI | 4 |
| 14:54727418-55053820 | scaffold1228.0:298348-624750 in wrong orientation according to MGI | 1 |
| 14:55186278-55353253 | scaffold1228.0:1-166976 in wrong orientation according to WI_MRC-RH | 1 |
| 14:59540096-60569343 | scaffold3746:1-1029248 in wrong orientation according to WI_MRC-RH | 1 |
| 14:61726991-62451932 | scaffold22348.0:128125-853066 in wrong orientation according to MGI | 1 |
| 14:62935720-65075689 | scaffold10829.2:1-2139970 in wrong orientation according to MGI | 1 |
| 14:70769081-73121464 | scaffold7624:1-2352384 in wrong orientation according to MGI | 1 |
| 14:73992660-74668223 | scaffold15215:353494-1029057 in wrong orientation according to WI_MRC-RH | 1 |
| 14:74668235-74832076 | scaffold7502.2:1-163842 in wrong orientation according to WI_MRC-RH | 1 |
| 14:107804482-108604501 | scaffold232:1-800020 in wrong orientation according to MGI | 1 |
| 14:133525183-134071801 | scaffold6038.1:27738-573590 in wrong orientation according to MGI | 3 |
Chromosome: 15
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 15:921584-996075 | scaffold6757:383592-458083 in wrong orientation according to WI_MRC-RH | 1 |
| 15:5911501-6251589 | scaffold5567.1:94915-435003 in wrong orientation according to WI_MRC-RH | 1 |
| 15:9202290-9481966 | scaffold4127.0:1-279677 in wrong orientation according to WI_MRC-RH | 1 |
| 15:11426430-11996110 | scaffold1591:1092614-1662294 in wrong orientation according to MGI | 1 |
| 15:14257517-14415721 | scaffold2742.0:500954-668827 in wrong orientation according to MGI | 2 |
| 15:29829810-30273376 | scaffold5938.0:367799-811365 in wrong orientation according to MGI | 1 |
| 15:30969264-31541449 | scaffold608:122758-694943 in wrong orientation according to MGI | 1 |
| 15:33527402-34412332 | scaffold10975.1:127-885057 in wrong orientation according to MGI | 1 |
| 15:34420397-34723074 | scaffold1919:336974-639651 in wrong orientation according to MGI | 1 |
| 15:34724537-35061509 | scaffold1919:1-336973 in wrong orientation according to WI_MRC-RH | 1 |
| 15:35665915-36516557 | scaffold7336:77295-927937 in wrong orientation according to MGI | 1 |
| 15:38913945-39347920 | scaffold829:554811-996356 in wrong orientation according to WI_MRC-RH | 2 |
| 15:40126686-40790183 | scaffold4463.1:412-663909 in wrong orientation according to MGI | 1 |
| 15:41419673-41704723 | scaffold2869.0:239760-524810 in wrong orientation according to WI_MRC-RH | 1 |
| 15:41709964-42043913 | scaffold17686:1-333950 in wrong orientation according to MGI | 1 |
| 15:42056595-42594600 | scaffold15768:8146-546151 in wrong orientation according to MGI | 1 |
| 15:42730417-42892345 | scaffold2409.3:1-161929 in wrong orientation according to MGI | 1 |
| 15:45897652-46603150 | scaffold630.0:157078-862576 in wrong orientation according to MGI | 1 |
| 15:49578778-50045424 | scaffold285.0:235433-705182 in wrong orientation according to WI_MRC-RH | 3 |
| 15:59341302-59876973 | scaffold15240:1-535672 in wrong orientation according to WI_MRC-RH | 1 |
| 15:60813814-61612259 | scaffold10417.1:146-798591 in wrong orientation according to MGI | 1 |
| 15:63538445-63862118 | scaffold3577.0:1-323674 in wrong orientation according to MGI | 1 |
| 15:74753071-75105093 | scaffold630.1:1-352023 in wrong orientation according to MGI | 1 |
| 15:75205446-76100521 | scaffold5029:84305-979380 in wrong orientation according to MGI | 1 |
| 15:76133622-76812713 | scaffold1378.1:1-679092 in wrong orientation according to MGI | 1 |
| 15:77101104-77702237 | scaffold5666:1-601134 in wrong orientation according to MGI | 1 |
| 15:79238502-79840499 | scaffold619.0:7513-609510 in wrong orientation according to MGI | 1 |
| 15:82419847-83445811 | scaffold964.1:388-1026352 in wrong orientation according to MGI | 1 |
| 15:83570030-84493106 | scaffold7355:712319-1635395 in wrong orientation according to MGI | 1 |
| 15:87415207-87685969 | scaffold13625:1-270763 in wrong orientation according to MGI | 1 |
| 15:89845776-89936362 | scaffold23356:1-90587 in wrong orientation according to WI_MRC-RH | 1 |
| 15:89936374-89979085 | scaffold2098.2:1976856-2019567 in wrong orientation according to WI_MRC-RH | 1 |
| 15:91955860-92146545 | scaffold2206:1-190686 in wrong orientation according to MGI | 1 |
| 15:94465370-94868975 | scaffold5755:1-403606 in wrong orientation according to WI_MRC-RH | 1 |
| 15:98206888-98763730 | scaffold4265.4:1-556843 in wrong orientation according to MGI | 1 |
| 15:101566045-101697861 | scaffold2215.0:1-131817 in wrong orientation according to WI_MRC-RH | 1 |
| 15:101795238-103056749 | scaffold2215.0:220932-1482443 in wrong orientation according to MGI | 1 |
| 15:103399088-104195304 | scaffold1828.0:334300-1133275 in wrong orientation according to MGI | 2 |
| 15:105648269-106481632 | scaffold2269.0:1-833364 in wrong orientation according to MGI | 1 |
| 15:106482020-107827902 | scaffold3007.0:1-1352056 in wrong orientation according to MGI | 2 |
| 15:109402528-110230596 | scaffold3638:294011-1122079 in wrong orientation according to MGI | 1 |
| 15:111939257-111987670 | scaffold1270:1014321-1062734 in wrong orientation according to MGI | 1 |
| 15:111989145-113003144 | scaffold1270:1-1014320 in wrong orientation according to MGI | 3 |
Chromosome: 16
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 16:1365878-1922185 | scaffold5928:6403-562710 in wrong orientation according to MGI | 1 |
| 16:3292674-3498686 | scaffold5319.0:1-206013 in wrong orientation according to MGI | 1 |
| 16:4705019-5762451 | scaffold504.0:1-1057433 in wrong orientation according to MGI | 1 |
| 16:5796026-6482349 | scaffold5727:21823-710881 in wrong orientation according to MGI | 2 |
| 16:10890896-11064463 | scaffold1189.0:869606-1043173 in wrong orientation according to WI_MRC-RH | 1 |
| 16:11065355-11934959 | scaffold1189.0:1-869605 in wrong orientation according to MGI | 1 |
| 16:13262434-13367530 | scaffold385:350288-455384 in wrong orientation according to WI_MRC-RH | 1 |
| 16:15196684-15797301 | scaffold1779:580712-1181329 in wrong orientation according to MGI | 1 |
| 16:16383017-16908136 | scaffold11432.0:106935-632054 in wrong orientation according to MGI | 1 |
| 16:18300264-18649607 | scaffold26351:1-349344 in wrong orientation according to MGI | 1 |
| 16:18658891-18806652 | scaffold633.1:6183-153944 in wrong orientation according to WI_MRC-RH | 1 |
| 16:20177709-20327989 | scaffold3976:1-150281 in wrong orientation according to MGI | 1 |
| 16:31297483-31552722 | scaffold18818:1-255240 in wrong orientation according to MGI | 1 |
| 16:32356458-33091949 | scaffold899.2:181975-917466 in wrong orientation according to MGI | 1 |
| 16:34796202-35553454 | scaffold899.2:2619951-3377203 in wrong orientation according to MGI | 1 |
| 16:35807646-35968523 | scaffold16527.1:1-160878 in wrong orientation according to WI_MRC-RH | 1 |
| 16:36275974-36714524 | scaffold1666.1:1-438551 in wrong orientation according to WI_MRC-RH | 1 |
| 16:36714536-37296173 | scaffold1666.0:2735136-3316773 in wrong orientation according to MGI | 1 |
| 16:42365225-43566755 | scaffold2530.1:455903-1657433 in wrong orientation according to MGI | 1 |
| 16:44211360-44667416 | scaffold4809:18196-490049 in wrong orientation according to MGI | 2 |
| 16:44869756-45471944 | scaffold1478.5:1-602189 in wrong orientation according to MGI | 1 |
| 16:46459734-46620161 | scaffold2538.1:391160-551587 in wrong orientation according to WI_MRC-RH | 1 |
| 16:47238554-47674297 | scaffold680:222332-658075 in wrong orientation according to WI_MRC-RH | 1 |
| 16:49016497-49169724 | scaffold4161:200475-353702 in wrong orientation according to MGI | 1 |
| 16:50250010-50389086 | scaffold677.1:631885-770961 in wrong orientation according to MGI | 1 |
| 16:60690389-61293076 | scaffold957:1-602688 in wrong orientation according to WI_MRC-RH | 1 |
| 16:62116526-62319672 | scaffold4488.1:1-203147 in wrong orientation according to WI_MRC-RH | 1 |
| 16:64461924-64564879 | scaffold1375.0:56381-159336 in wrong orientation according to MGI | 1 |
| 16:65907337-66115275 | scaffold1124.2:923-208861 in wrong orientation according to MGI | 1 |
| 16:67664897-68060482 | scaffold425.1:559328-955999 in wrong orientation according to WI_MRC-RH | 2 |
| 16:68621799-68733889 | scaffold1676.0:1-112091 in wrong orientation according to WI_MRC-RH | 1 |
| 16:70812581-71640311 | scaffold1262.0:159270-987000 in wrong orientation according to MGI | 1 |
| 16:87550407-87974903 | scaffold4824:613288-1037784 in wrong orientation according to MGI | 1 |
| 16:88367304-88398387 | scaffold1289:1-31084 in wrong orientation according to WI_MRC-RH | 1 |
| 16:103731402-104112231 | scaffold2665.0:2077062-2466004 in wrong orientation according to MGI | 2 |
| 16:104112844-104367257 | scaffold2665.0:1822648-2077061 in wrong orientation according to WI_MRC-RH | 1 |
| 16:104375320-104594509 | scaffold2665.0:1603458-1822647 in wrong orientation according to WI_MRC-RH | 1 |
| 16:108644079-109005151 | scaffold5260:1-361073 in wrong orientation according to MGI | 1 |
| 16:110209407-110559108 | scaffold12633:608143-957844 in wrong orientation according to WI_MRC-RH | 1 |
Chromosome: 17
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 17:222102-474996 | scaffold504.2:1-252895 in wrong orientation according to WI_MRC-RH | 1 |
| 17:3228163-3576911 | scaffold757.3:1484114-1832862 in wrong orientation according to MGI | 1 |
| 17:13312983-13378812 | scaffold43355:1-65830 in wrong orientation according to WI_MRC-RH | 1 |
| 17:13753935-14021816 | scaffold2725:1-267882 in wrong orientation according to WI_MRC-RH | 1 |
| 17:16746021-16859028 | scaffold3893.0:192087-305094 in wrong orientation according to WI_MRC-RH | 1 |
| 17:25902244-26000561 | scaffold28765:1-98318 in wrong orientation according to MGI | 1 |
| 17:28094365-28523739 | scaffold3497:1106213-1535587 in wrong orientation according to WI_MRC-RH | 1 |
| 17:32959739-33463048 | scaffold7742.0:1-503310 in wrong orientation according to MGI | 1 |
| 17:33524687-33773806 | scaffold7742.0:543989-793108 in wrong orientation according to WI_MRC-RH | 1 |
| 17:35350998-35506255 | scaffold4650:398661-553918 in wrong orientation according to MGI | 1 |
| 17:35539312-35600254 | scaffold4650:553919-614861 in wrong orientation according to WI_MRC-RH | 1 |
| 17:35600382-35635752 | C1669053:1-35371 in wrong orientation according to WI_MRC-RH | 1 |
| 17:35734446-35862313 | scaffold11428:1-127868 in wrong orientation according to MGI | 1 |
| 17:36515497-36581550 | scaffold4014:1-66054 in wrong orientation according to MGI | 1 |
| 17:36709297-36797391 | scaffold29148:1-88095 in wrong orientation according to WI_MRC-RH | 1 |
| 17:37495297-37595828 | scaffold8777:378562-479093 in wrong orientation according to WI_MRC-RH | 1 |
| 17:44337219-44696482 | scaffold7576:1-359264 in wrong orientation according to MGI | 1 |
| 17:44817473-45055040 | scaffold9245:110739-348306 in wrong orientation according to MGI | 1 |
| 17:48905609-50253604 | scaffold2958.2:1-1347996 in wrong orientation according to MGI | 1 |
| 17:50561427-50795117 | scaffold3781:1-233691 in wrong orientation according to MGI | 1 |
| 17:51955381-52157045 | scaffold3108:137975-339639 in wrong orientation according to MGI | 1 |
| 17:52158087-52748838 | scaffold3108:341123-931874 in wrong orientation according to MGI | 1 |
| 17:54062251-54681194 | scaffold376.0:1-618944 in wrong orientation according to MGI | 1 |
| 17:55994670-56812907 | scaffold1441.1:345823-1164060 in wrong orientation according to MGI | 1 |
| 17:56813196-57151024 | scaffold1441.1:7994-345822 in wrong orientation according to WI_MRC-RH | 1 |
| 17:57716268-57817996 | scaffold39.0:553674-655402 in wrong orientation according to MGI | 1 |
| 17:59956108-60671268 | scaffold446:716540-1431700 in wrong orientation according to WI_MRC-RH | 1 |
| 17:61711843-62008240 | scaffold2198:1-296398 in wrong orientation according to WI_MRC-RH | 1 |
| 17:62048139-62146467 | scaffold7502.0:37815-136143 in wrong orientation according to WI_MRC-RH | 1 |
| 17:63287825-63503605 | scaffold3347:1-215781 in wrong orientation according to WI_MRC-RH | 1 |
| 17:64771368-65184643 | scaffold2056.1:419825-833100 in wrong orientation according to WI_MRC-RH | 1 |
| 17:73038783-73283035 | scaffold3235.3:1190567-1434819 in wrong orientation according to WI_MRC-RH | 1 |
| 17:75238147-75414048 | scaffold5319.1:356233-532134 in wrong orientation according to MGI | 1 |
| 17:75420529-75771481 | scaffold5319.1:1-350953 in wrong orientation according to WI_MRC-RH | 1 |
| 17:75966007-76491472 | scaffold9732:1-525466 in wrong orientation according to MGI | 1 |
| 17:77348162-77734568 | scaffold10605.0:142177-528583 in wrong orientation according to MGI | 1 |
| 17:81437713-82712228 | scaffold3702.0:1-1274516 in wrong orientation according to MGI | 1 |
| 17:82732372-83063224 | scaffold3702.0:1288809-1619661 in wrong orientation according to WI_MRC-RH | 1 |
| 17:87473524-87912740 | scaffold5929:383910-823126 in wrong orientation according to WI_MRC-RH | 1 |
| 17:88106644-88300176 | scaffold5929:1-193533 in wrong orientation according to WI_MRC-RH | 1 |
| 17:89112088-90182240 | scaffold3694:1-1070153 in wrong orientation according to MGI | 1 |
| 17:91181459-91539892 | scaffold508.1:437596-796029 in wrong orientation according to MGI | 1 |
| 17:91547196-91830770 | scaffold508.1:799302-1082876 in wrong orientation according to MGI | 1 |
| 17:92615073-93592367 | scaffold4623.0:1-977295 in wrong orientation according to MGI | 1 |
| 17:98392767-98634244 | scaffold21317:1-241478 in wrong orientation according to WI_MRC-RH | 1 |
Chromosome: 18
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 18:175621-664109 | scaffold3051.0:594249-1082737 in wrong orientation according to WI_MRC-RH | 1 |
| 18:1277391-1461451 | scaffold168.0:1-184061 in wrong orientation according to WI_MRC-RH | 1 |
| 18:5776624-6373242 | scaffold3240:1-596619 in wrong orientation according to WI_MRC-RH | 1 |
| 18:8951129-9103105 | scaffold1898.4:1058-153034 in wrong orientation according to MGI | 1 |
| 18:9336964-10536062 | scaffold1848.1:1-1199099 in wrong orientation according to MGI | 1 |
| 18:12295149-13218828 | scaffold1067:1176554-2100233 in wrong orientation according to MGI | 1 |
| 18:16197209-16512854 | scaffold3057:1-315646 in wrong orientation according to MGI | 1 |
| 18:20478043-20626165 | scaffold3252:1-148123 in wrong orientation according to WI_MRC-RH | 1 |
| 18:22185618-22938674 | scaffold68.1:1-753057 in wrong orientation according to WI_MRC-RH | 1 |
| 18:23057077-23414164 | scaffold6118:1-357088 in wrong orientation according to WI_MRC-RH | 1 |
| 18:24869179-25605212 | scaffold6201:1361847-2097880 in wrong orientation according to WI_MRC-RH | 1 |
| 18:33324632-33798061 | scaffold6167.1:1-473430 in wrong orientation according to WI_MRC-RH | 1 |
| 18:36516416-37116866 | scaffold11847:185049-785499 in wrong orientation according to MGI | 1 |
| 18:37371731-38476672 | scaffold1571.1:34971-1139912 in wrong orientation according to MGI | 1 |
| 18:38614378-38876195 | scaffold1571.1:1273151-1533704 in wrong orientation according to WI_MRC-RH | 2 |
| 18:39367339-39661679 | scaffold4320:1-294341 in wrong orientation according to WI_MRC-RH | 1 |
| 18:40344193-40447015 | scaffold7331:273468-376290 in wrong orientation according to WI_MRC-RH | 1 |
| 18:53183698-53472431 | scaffold275.1:851251-1139984 in wrong orientation according to WI_MRC-RH | 1 |
| 18:53602527-54219357 | scaffold275.1:106209-723039 in wrong orientation according to WI_MRC-RH | 1 |
| 18:69878858-70089572 | scaffold2754:1362541-1573255 in wrong orientation according to WI_MRC-RH | 1 |
| 18:72957512-73088218 | scaffold6426.1:1-130707 in wrong orientation according to WI_MRC-RH | 1 |
| 18:73097140-74455943 | scaffold2872:1-1358804 in wrong orientation according to MGI | 1 |
| 18:76451766-76850583 | scaffold5868:1-398818 in wrong orientation according to WI_MRC-RH | 1 |
| 18:84034574-84656376 | scaffold12098:13167-634969 in wrong orientation according to WI_MRC-RH | 1 |
Chromosome: 19
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 19:367579-507569 | scaffold333:2396888-2554340 in wrong orientation according to WI_MRC-RH | 2 |
| 19:508756-825518 | scaffold333:2076750-2396887 in wrong orientation according to WI_MRC-RH | 2 |
| 19:843263-1680518 | scaffold333:1227165-2064420 in wrong orientation according to WI_MRC-RH | 1 |
| 19:1680958-1900885 | scaffold333:1007237-1227164 in wrong orientation according to WI_MRC-RH | 1 |
| 19:2424951-2473746 | scaffold333:436380-485175 in wrong orientation according to WI_MRC-RH | 1 |
| 19:3941663-4024318 | scaffold13924:1-82656 in wrong orientation according to WI_MRC-RH | 1 |
| 19:4710995-4757702 | scaffold1503.1:1-46708 in wrong orientation according to WI_MRC-RH | 1 |
| 19:5946099-6252545 | scaffold5522:167898-474344 in wrong orientation according to MGI | 1 |
| 19:6255343-6472138 | scaffold5522:474345-691140 in wrong orientation according to WI_MRC-RH | 1 |
| 19:7369247-8793099 | scaffold98:1-1423853 in wrong orientation according to MGI | 1 |
| 19:10579310-10853754 | scaffold1392:158279-432723 in wrong orientation according to WI_MRC-RH | 1 |
| 19:15205486-15634620 | scaffold2922:1-429135 in wrong orientation according to WI_MRC-RH | 1 |
| 19:15981750-16252291 | scaffold834.0:1-270542 in wrong orientation according to WI_MRC-RH | 1 |
| 19:25369573-25800478 | scaffold16871:1-430906 in wrong orientation according to WI_MRC-RH | 1 |
| 19:28219837-29224582 | scaffold394.0:1803909-2808654 in wrong orientation according to MGI | 1 |
| 19:35421487-35679692 | scaffold3245:1-258206 in wrong orientation according to WI_MRC-RH | 1 |
| 19:35704033-35922832 | scaffold3245:276598-495397 in wrong orientation according to WI_MRC-RH | 1 |
| 19:35932019-36354070 | scaffold3245:495398-917449 in wrong orientation according to WI_MRC-RH | 1 |
| 19:38507726-39796546 | scaffold3332:323226-1612046 in wrong orientation according to MGI | 1 |
| 19:42867468-43983747 | scaffold306:822034-1938313 in wrong orientation according to MGI | 1 |
| 19:43986830-44808862 | scaffold306:1-822033 in wrong orientation according to MGI | 1 |
| 19:44837087-45069089 | scaffold3059:552853-784855 in wrong orientation according to WI_MRC-RH | 1 |
| 19:48167951-48532311 | scaffold21196:1-364361 in wrong orientation according to MGI | 1 |
| 19:48532323-48946054 | scaffold241.3:1-413732 in wrong orientation according to MGI | 1 |
| 19:49075768-49433121 | scaffold241.3:540908-898261 in wrong orientation according to MGI | 1 |
| 19:57712558-57909488 | scaffold2528.1:476987-673917 in wrong orientation according to WI_MRC-RH | 1 |
| 19:58782145-59108805 | scaffold2528.1:1540297-1866957 in wrong orientation according to MGI | 1 |
| 19:59623749-60620578 | scaffold1576:1-996830 in wrong orientation according to MGI | 1 |
| 19:62164291-62553830 | scaffold2410.0:1-389540 in wrong orientation according to WI_MRC-RH | 1 |
| 19:62679033-63861426 | scaffold2410.0:511949-1694342 in wrong orientation according to MGI | 1 |
Chromosome: 2
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 2:349093-944023 | scaffold4999:36302-631232 in wrong orientation according to MGI | 1 |
| 2:946347-982582 | scaffold4999:1-36236 in wrong orientation according to MGI | 1 |
| 2:5969957-6067255 | scaffold7578.0:1-97299 in wrong orientation according to MGI | 1 |
| 2:7326247-7814062 | scaffold23322:1-489233 in wrong orientation according to MGI | 2 |
| 2:10970409-11306633 | scaffold4573.1:381332-717556 in wrong orientation according to WI_MRC-RH | 1 |
| 2:14594885-15142189 | scaffold165.3:8467-555771 in wrong orientation according to MGI | 1 |
| 2:15205290-15388121 | scaffold9803.2:39144-221975 in wrong orientation according to WI_MRC-RH | 1 |
| 2:17450628-17525252 | scaffold1583.1:1-74625 in wrong orientation according to WI_MRC-RH | 1 |
| 2:22276001-22521809 | scaffold586:373732-619540 in wrong orientation according to WI_MRC-RH | 1 |
| 2:25822467-26369196 | scaffold521.1:31846-578575 in wrong orientation according to MGI | 1 |
| 2:26591864-26719842 | scaffold2800.0:134500-262478 in wrong orientation according to MGI | 1 |
| 2:26720532-27163397 | scaffold2800.0:262479-705344 in wrong orientation according to MGI | 1 |
| 2:27697279-28879367 | scaffold2800.0:1238337-2420425 in wrong orientation according to WI_MRC-RH | 1 |
| 2:30107654-30313886 | scaffold31816:26601-232833 in wrong orientation according to WI_MRC-RH | 1 |
| 2:31837988-32146701 | scaffold7414:1-309886 in wrong orientation according to WI_MRC-RH | 2 |
| 2:32366863-32528962 | scaffold2165.0:407711-569810 in wrong orientation according to MGI | 1 |
| 2:34929937-35227548 | scaffold254.1:1-300848 in wrong orientation according to MGI | 2 |
| 2:35619295-35675426 | scaffold43354:1-56132 in wrong orientation according to WI_MRC-RH | 1 |
| 2:35675438-36460932 | scaffold6976.1:372441-1157935 in wrong orientation according to MGI | 1 |
| 2:36461702-36709857 | scaffold6976.1:124285-372440 in wrong orientation according to MGI | 1 |
| 2:38981983-39916228 | scaffold1277.1:1203875-2144172 in wrong orientation according to MGI | 2 |
| 2:47889495-48384387 | scaffold271.6:2491855-2986747 in wrong orientation according to MGI | 1 |
| 2:49124785-49364023 | scaffold271.6:3719212-3958450 in wrong orientation according to MGI | 1 |
| 2:52320307-52578951 | scaffold2761.1:399380-658024 in wrong orientation according to WI_MRC-RH | 1 |
| 2:55505890-56009969 | scaffold981:1-504080 in wrong orientation according to MGI | 1 |
| 2:60407755-60483036 | scaffold4538:6120-81401 in wrong orientation according to MGI | 1 |
| 2:61847563-62553925 | scaffold485.2:379359-1087807 in wrong orientation according to MGI | 2 |
| 2:62931419-63566834 | scaffold485.2:1455550-2090965 in wrong orientation according to WI_MRC-RH | 1 |
| 2:63928421-64651872 | scaffold271.1:258-723709 in wrong orientation according to MGI | 1 |
| 2:74787276-75213847 | scaffold7570.1:1333826-1760397 in wrong orientation according to WI_MRC-RH | 1 |
| 2:76793086-77504087 | scaffold1841.0:1-711002 in wrong orientation according to MGI | 1 |
| 2:77920302-78419601 | scaffold3704.0:1-499300 in wrong orientation according to WI_MRC-RH | 1 |
| 2:84276016-84628869 | scaffold3695:213071-565924 in wrong orientation according to MGI | 1 |
| 2:85447705-86161594 | scaffold943:67823-781712 in wrong orientation according to MGI | 1 |
| 2:88140736-88660269 | scaffold2204.3:1195610-1715143 in wrong orientation according to MGI | 1 |
| 2:101191028-101479943 | scaffold2480:1-288916 in wrong orientation according to WI_MRC-RH | 1 |
| 2:103566639-103844473 | scaffold23270.0:1-277835 in wrong orientation according to MGI | 1 |
| 2:103844830-104497580 | scaffold23270.0:277836-930586 in wrong orientation according to WI_MRC-RH | 1 |
| 2:117294784-118269406 | scaffold7694:662124-1628904 in wrong orientation according to MGI | 8 |
| 2:118277390-118851894 | scaffold7694:85509-660013 in wrong orientation according to MGI | 1 |
| 2:119268326-119642048 | scaffold2441:1271457-1645179 in wrong orientation according to WI_MRC-RH | 1 |
| 2:124850658-124931111 | scaffold214:50080-130533 in wrong orientation according to WI_MRC-RH | 1 |
| 2:128445545-128768485 | scaffold688.1:1-322941 in wrong orientation according to WI_MRC-RH | 1 |
| 2:128959798-129169327 | scaffold3748.1:180622-390151 in wrong orientation according to WI_MRC-RH | 1 |
| 2:130624661-131354074 | scaffold390:422142-1151555 in wrong orientation according to MGI | 1 |
| 2:131777192-132871450 | scaffold6233.0:1-1094259 in wrong orientation according to MGI | 1 |
| 2:133277958-133706327 | scaffold4224:1-428370 in wrong orientation according to MGI | 1 |
| 2:135563643-135859612 | scaffold3394:457111-753080 in wrong orientation according to WI_MRC-RH | 1 |
| 2:139109942-139465531 | scaffold951:94025-449614 in wrong orientation according to MGI | 1 |
| 2:140858480-141069577 | scaffold951:1834275-2045372 in wrong orientation according to MGI | 1 |
| 2:141363927-142093516 | scaffold951:2342736-3072325 in wrong orientation according to MGI | 1 |
| 2:144010813-145426540 | scaffold951:4988938-6404665 in wrong orientation according to MGI | 1 |
| 2:146826073-146935506 | scaffold5768:196488-305921 in wrong orientation according to WI_MRC-RH | 1 |
| 2:146944068-147035013 | scaffold2617.0:1280283-1371228 in wrong orientation according to MGI | 1 |
| 2:150346776-150755401 | scaffold6063:1-408626 in wrong orientation according to WI_MRC-RH | 1 |
| 2:150756291-151441779 | scaffold6063:408627-1094115 in wrong orientation according to MGI | 1 |
| 2:152013271-152581096 | scaffold1888.0:363703-931528 in wrong orientation according to MGI | 1 |
| 2:155158054-155720574 | scaffold3153:1459266-2021786 in wrong orientation according to MGI | 1 |
| 2:158983724-159576300 | scaffold15.0:729491-1322067 in wrong orientation according to MGI | 1 |
| 2:164091937-164385149 | scaffold38609:1-293213 in wrong orientation according to WI_MRC-RH | 1 |
| 2:164385185-165014157 | scaffold4986.0:1-628973 in wrong orientation according to WI_MRC-RH | 1 |
| 2:166080692-166998075 | scaffold8450:1-919779 in wrong orientation according to MGI | 2 |
| 2:166998587-167162557 | scaffold964.0:1-163971 in wrong orientation according to MGI | 1 |
| 2:167232022-167600493 | scaffold8074:1-368472 in wrong orientation according to MGI | 1 |
| 2:171127751-171696693 | scaffold152:1-568943 in wrong orientation according to MGI | 1 |
| 2:172184105-172481867 | scaffold1604.1:8796-306558 in wrong orientation according to MGI | 1 |
| 2:173045064-173348226 | scaffold7686.2:209894-513056 in wrong orientation according to MGI | 1 |
| 2:174456863-175310035 | scaffold4084:1-853173 in wrong orientation according to MGI | 1 |
| 2:175887534-176317740 | scaffold633.0:1-428419 in wrong orientation according to MGI | 5 |
| 2:176851079-177238110 | scaffold633.0:946450-1331638 in wrong orientation according to WI_MRC-RH | 3 |
| 2:179181080-179628681 | scaffold2611:202642-650243 in wrong orientation according to MGI | 1 |
| 2:181737656-182481808 | scaffold2497.0:349161-1093313 in wrong orientation according to MGI | 1 |
| 2:184626043-184895376 | scaffold12841:273803-543136 in wrong orientation according to WI_MRC-RH | 1 |
| 2:185175550-185200226 | C1655001:660-25336 in wrong orientation according to WI_MRC-RH | 1 |
| 2:185945808-186280376 | scaffold241.0:742506-1077074 in wrong orientation according to MGI | 1 |
| 2:186823202-186931906 | scaffold1815.1:1-108705 in wrong orientation according to MGI | 1 |
| 2:186931918-188194423 | scaffold1265:1-1263041 in wrong orientation according to MGI | 4 |
| 2:193763052-194809422 | scaffold9110:995959-2042329 in wrong orientation according to MGI | 1 |
Chromosome: 3
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 3:2779761-3359146 | scaffold1046.2:465787-1047579 in wrong orientation according to MGI | 2 |
| 3:6941565-7394609 | scaffold6369:1057511-1510555 in wrong orientation according to WI_MRC-RH | 1 |
| 3:18504443-19178363 | scaffold1186:18003-691923 in wrong orientation according to WI_MRC-RH | 1 |
| 3:22109282-23281440 | scaffold546:1-1172159 in wrong orientation according to MGI | 1 |
| 3:27056389-27169448 | scaffold809:227278-340337 in wrong orientation according to WI_MRC-RH | 1 |
| 3:27170611-27576344 | scaffold809:340338-746071 in wrong orientation according to WI_MRC-RH | 1 |
| 3:30349634-30847817 | scaffold2588:58313-556496 in wrong orientation according to MGI | 1 |
| 3:32610463-32771021 | scaffold2119.0:1-160559 in wrong orientation according to WI_MRC-RH | 1 |
| 3:34387275-35366535 | scaffold113:918-979112 in wrong orientation according to MGI | 3 |
| 3:35480913-35795565 | scaffold113:1086517-1401169 in wrong orientation according to MGI | 1 |
| 3:36395551-36952679 | scaffold927.1:443-557571 in wrong orientation according to WI_MRC-RH | 1 |
| 3:37078457-37407678 | scaffold27327:8622-337843 in wrong orientation according to MGI | 1 |
| 3:38997495-39759212 | scaffold5881.2:674952-1436669 in wrong orientation according to MGI | 1 |
| 3:65658796-66196069 | scaffold11108.0:492358-1029631 in wrong orientation according to MGI | 1 |
| 3:66196638-66679515 | scaffold11108.0:9480-492357 in wrong orientation according to WI_MRC-RH | 1 |
| 3:75325875-75396086 | scaffold39567:1-72285 in wrong orientation according to WI_MRC-RH | 2 |
| 3:90709895-91417214 | scaffold2844:297600-1004919 in wrong orientation according to MGI | 1 |
| 3:92665663-93587332 | scaffold583.3:374383-1296052 in wrong orientation according to MGI | 1 |
| 3:93968864-94214068 | scaffold12675:1-245205 in wrong orientation according to WI_MRC-RH | 1 |
| 3:95956296-96190231 | scaffold1700:484382-718317 in wrong orientation according to WI_MRC-RH | 1 |
| 3:96191580-96928233 | scaffold1700:718318-1454971 in wrong orientation according to WI_MRC-RH | 1 |
| 3:96990962-98194335 | scaffold1612.1:1-1203374 in wrong orientation according to MGI | 1 |
| 3:100030451-100600095 | scaffold261.1:959208-1528852 in wrong orientation according to WI_MRC-RH | 1 |
| 3:100601755-101191831 | scaffold261.1:369272-959207 in wrong orientation according to MGI | 4 |
| 3:101210094-101579364 | scaffold261.1:1-369271 in wrong orientation according to WI_MRC-RH | 1 |
| 3:101579564-101670485 | scaffold3832:354490-445411 in wrong orientation according to WI_MRC-RH | 1 |
| 3:103668613-103970111 | scaffold12469.0:1-301499 in wrong orientation according to MGI | 1 |
| 3:106436469-106584137 | scaffold87:1-147669 in wrong orientation according to WI_MRC-RH | 1 |
| 3:106627207-106748598 | scaffold8252:1-121392 in wrong orientation according to WI_MRC-RH | 1 |
| 3:107006452-107173715 | scaffold20283:1-174626 in wrong orientation according to WI_MRC-RH | 2 |
| 3:108314594-108533690 | scaffold989:172799-391895 in wrong orientation according to WI_MRC-RH | 1 |
| 3:108566969-108568843 | scaffold34289:1-1875 in wrong orientation according to WI_MRC-RH | 1 |
| 3:109146124-109306054 | scaffold7276:1-159931 in wrong orientation according to WI_MRC-RH | 1 |
| 3:109306066-109371330 | scaffold1217.1:512935-578199 in wrong orientation according to WI_MRC-RH | 1 |
| 3:109549962-109659006 | scaffold1217.1:230968-339134 in wrong orientation according to WI_MRC-RH | 3 |
| 3:109890818-110068745 | scaffold9612:1-177928 in wrong orientation according to WI_MRC-RH | 1 |
| 3:110648750-110899785 | scaffold7275:1-251036 in wrong orientation according to WI_MRC-RH | 1 |
| 3:110902865-111728116 | scaffold3708:1-825252 in wrong orientation according to MGI | 1 |
| 3:112189494-112871072 | scaffold6030.0:1-681579 in wrong orientation according to MGI | 1 |
| 3:115005231-115359656 | scaffold2410.3:1221540-1575965 in wrong orientation according to MGI | 1 |
| 3:117908371-118070346 | scaffold19373:204614-366589 in wrong orientation according to WI_MRC-RH | 1 |
| 3:118070712-118275300 | scaffold19373:1-204589 in wrong orientation according to WI_MRC-RH | 1 |
| 3:118275312-118885113 | scaffold1805:1-609802 in wrong orientation according to MGI | 1 |
| 3:120052452-120367691 | scaffold4260.0:424892-740131 in wrong orientation according to WI_MRC-RH | 1 |
| 3:120367703-121013955 | scaffold5829:1-646253 in wrong orientation according to WI_MRC-RH | 1 |
| 3:121015596-121412909 | scaffold5829:646254-1043567 in wrong orientation according to WI_MRC-RH | 1 |
| 3:122036844-122278684 | scaffold1019:1-241841 in wrong orientation according to WI_MRC-RH | 1 |
| 3:148619206-149020812 | scaffold1824:190029-591635 in wrong orientation according to MGI | 1 |
| 3:149208680-150449036 | scaffold1824:773196-2013552 in wrong orientation according to MGI | 1 |
| 3:157275895-158139126 | scaffold2409.1:17565-882523 in wrong orientation according to MGI | 2 |
| 3:159419084-160355954 | scaffold814.2:1354750-2291620 in wrong orientation according to MGI | 1 |
| 3:163094774-163269429 | scaffold302.0:1-174656 in wrong orientation according to MGI | 1 |
| 3:168110972-168250027 | scaffold2039:312978-452033 in wrong orientation according to WI_MRC-RH | 1 |
| 3:168611120-169610860 | scaffold2039:808657-1809789 in wrong orientation according to MGI | 2 |
| 3:175037567-175334273 | scaffold832.0:214210-514981 in wrong orientation according to WI_MRC-RH | 2 |
| 3:176234289-177116817 | scaffold962.3:374059-1256587 in wrong orientation according to MGI | 1 |
| 3:177117091-177491148 | scaffold962.3:1-374058 in wrong orientation according to MGI | 1 |
| 3:180540222-181763092 | scaffold1219:1-1222871 in wrong orientation according to MGI | 1 |
| 3:181763130-182257592 | scaffold2268.3:149-494611 in wrong orientation according to WI_MRC-RH | 1 |
Chromosome: 4
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 4:435776-479002 | scaffold40001:1-43227 in wrong orientation according to WI_MRC-RH | 1 |
| 4:844440-1099338 | scaffold632:437534-692432 in wrong orientation according to WI_MRC-RH | 1 |
| 4:3321571-3579067 | scaffold15602:20367-277863 in wrong orientation according to WI_MRC-RH | 1 |
| 4:5184575-5711394 | scaffold4609:121599-648418 in wrong orientation according to MGI | 1 |
| 4:9077480-9428742 | scaffold5934.0:1-351263 in wrong orientation according to WI_MRC-RH | 1 |
| 4:12744327-12899229 | scaffold2870:72888-227790 in wrong orientation according to WI_MRC-RH | 1 |
| 4:19087886-19492244 | scaffold485.0:109938-514296 in wrong orientation according to WI_MRC-RH | 1 |
| 4:21397835-22185443 | scaffold4369.1:1-787609 in wrong orientation according to WI_MRC-RH | 1 |
| 4:25846438-26155991 | scaffold2691:406807-716360 in wrong orientation according to MGI | 1 |
| 4:35313663-35998402 | scaffold318.3:76141-764568 in wrong orientation according to MGI | 2 |
| 4:36066984-37319788 | scaffold318.3:830005-2082809 in wrong orientation according to MGI | 1 |
| 4:37536927-38125227 | scaffold318.3:2292726-2881026 in wrong orientation according to MGI | 1 |
| 4:43358642-43803954 | scaffold667:1513676-1958988 in wrong orientation according to WI_MRC-RH | 1 |
| 4:49327548-49492012 | scaffold14645:669-165133 in wrong orientation according to WI_MRC-RH | 1 |
| 4:53030175-54097710 | scaffold372.0:969349-2036884 in wrong orientation according to MGI | 1 |
| 4:54337468-54639078 | scaffold372.0:2165955-2467565 in wrong orientation according to MGI | 1 |
| 4:62533963-63727238 | scaffold3619:1-1197415 in wrong orientation according to MGI | 2 |
| 4:63850671-64610195 | scaffold3652:1-759525 in wrong orientation according to MGI | 1 |
| 4:73681838-73804115 | scaffold1583.0:646378-768655 in wrong orientation according to WI_MRC-RH | 1 |
| 4:74071077-74220935 | scaffold4268:1-149859 in wrong orientation according to MGI | 1 |
| 4:93182174-94054239 | scaffold1708:1-872066 in wrong orientation according to MGI | 1 |
| 4:94468435-95645443 | scaffold2083:1-1177009 in wrong orientation according to MGI | 1 |
| 4:95969831-96600865 | scaffold2083:1493509-2124543 in wrong orientation according to WI_MRC-RH | 1 |
| 4:97387576-97491753 | scaffold2071.1:169992-274169 in wrong orientation according to WI_MRC-RH | 1 |
| 4:97536997-97771330 | scaffold3933:1-230378 in wrong orientation according to MGI | 3 |
| 4:99896263-100390679 | scaffold12190.0:1-488233 in wrong orientation according to MGI | 3 |
| 4:100399892-100790023 | scaffold197.0:1-410179 in wrong orientation according to MGI | 2 |
| 4:102535522-103143837 | scaffold5911.2:391488-999803 in wrong orientation according to MGI | 1 |
| 4:109083858-109286584 | scaffold92.0:1878-204604 in wrong orientation according to WI_MRC-RH | 1 |
| 4:113285829-114432821 | scaffold2598:1-1146993 in wrong orientation according to MGI | 1 |
| 4:119529779-120307177 | scaffold9508:1-777399 in wrong orientation according to WI_MRC-RH | 1 |
| 4:121260193-121568242 | scaffold2353.1:2740021-3048070 in wrong orientation according to WI_MRC-RH | 1 |
| 4:122943094-124317692 | scaffold2353.1:1-1374599 in wrong orientation according to MGI | 1 |
| 4:125942024-126027724 | scaffold14104:1-85701 in wrong orientation according to WI_MRC-RH | 1 |
| 4:128206498-128456896 | scaffold12178.0:1-250399 in wrong orientation according to MGI | 1 |
| 4:130627086-131572451 | scaffold4127.1:280-948481 in wrong orientation according to MGI | 4 |
| 4:132925022-133278921 | scaffold1560.0:1-353900 in wrong orientation according to WI_MRC-RH | 1 |
| 4:133797805-135348075 | scaffold4978:1-1552891 in wrong orientation according to MGI | 2 |
| 4:137173865-137751691 | scaffold5261.1:12207-590033 in wrong orientation according to MGI | 1 |
| 4:137768499-137805411 | scaffold11208:1904-38816 in wrong orientation according to MGI | 1 |
| 4:138268185-139568013 | scaffold11208:500401-1800229 in wrong orientation according to MGI | 1 |
| 4:139847872-140847752 | scaffold2734.1:164144-1164024 in wrong orientation according to MGI | 1 |
| 4:140943700-141291848 | scaffold13168.0:47153-395301 in wrong orientation according to WI_MRC-RH | 1 |
| 4:141309809-141500091 | scaffold13168.1:1-190283 in wrong orientation according to WI_MRC-RH | 1 |
| 4:143856479-144843447 | scaffold10509:1-986969 in wrong orientation according to MGI | 1 |
| 4:146571646-147272211 | scaffold411.2:279-700844 in wrong orientation according to MGI | 1 |
| 4:147302199-147468752 | scaffold2734.2:1-166554 in wrong orientation according to WI_MRC-RH | 1 |
| 4:148022032-148937094 | scaffold16636:378408-1293470 in wrong orientation according to MGI | 1 |
| 4:149329689-149663513 | scaffold135.0:1-333825 in wrong orientation according to MGI | 1 |
| 4:149723171-150425441 | scaffold2385.2:1-702271 in wrong orientation according to MGI | 1 |
| 4:151091888-151478158 | scaffold20069.0:1-386271 in wrong orientation according to MGI | 1 |
| 4:153182219-153425325 | scaffold8975.0:6198-249304 in wrong orientation according to WI_MRC-RH | 1 |
| 4:154909162-155384234 | scaffold19286:1-475073 in wrong orientation according to WI_MRC-RH | 1 |
| 4:167130223-167424727 | scaffold1796.0:1-294505 in wrong orientation according to WI_MRC-RH | 1 |
| 4:169145065-169973502 | scaffold7053.1:421-828858 in wrong orientation according to MGI | 1 |
| 4:171205725-171613011 | scaffold2958.1:1-407287 in wrong orientation according to MGI | 1 |
| 4:171613023-172088060 | scaffold11237.0:1-475038 in wrong orientation according to MGI | 1 |
| 4:173079998-173082559 | C1266611:1-2562 in wrong orientation according to WI_MRC-RH | 1 |
Chromosome: 5
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 5:418561-502335 | scaffold250.1:1-83775 in wrong orientation according to WI_MRC-RH | 1 |
| 5:502347-641909 | scaffold2719:1-139563 in wrong orientation according to WI_MRC-RH | 1 |
| 5:778880-1076684 | scaffold2719:252606-547815 in wrong orientation according to WI_MRC-RH | 3 |
| 5:1407617-1896260 | scaffold2719:819897-1308540 in wrong orientation according to WI_MRC-RH | 1 |
| 5:6501835-6864522 | scaffold13613:35607-398294 in wrong orientation according to WI_MRC-RH | 1 |
| 5:19527226-19878347 | scaffold2038.2:691086-1042207 in wrong orientation according to MGI | 1 |
| 5:20594315-21124542 | scaffold2038.2:1752496-2282723 in wrong orientation according to MGI | 1 |
| 5:21394921-22050879 | scaffold4691:1-655959 in wrong orientation according to MGI | 1 |
| 5:25306758-25543816 | scaffold6651:939888-1176946 in wrong orientation according to WI_MRC-RH | 1 |
| 5:30076293-30659615 | scaffold5539:1-583323 in wrong orientation according to WI_MRC-RH | 1 |
| 5:30666705-30935154 | scaffold5539:583324-851773 in wrong orientation according to WI_MRC-RH | 1 |
| 5:31387967-32238756 | scaffold10460:162901-1013690 in wrong orientation according to MGI | 1 |
| 5:36728794-37353647 | scaffold1839:1126264-1751117 in wrong orientation according to MGI | 1 |
| 5:37353668-37774679 | scaffold14939:1-421012 in wrong orientation according to MGI | 1 |
| 5:39495991-40093641 | scaffold104.0:935183-1532833 in wrong orientation according to MGI | 1 |
| 5:46556656-46626291 | scaffold12445:190642-260277 in wrong orientation according to WI_MRC-RH | 1 |
| 5:56585015-56931551 | scaffold9474.0:16538-363074 in wrong orientation according to MGI | 1 |
| 5:57531949-57723257 | scaffold7257.1:1-191309 in wrong orientation according to WI_MRC-RH | 1 |
| 5:62845241-63083028 | scaffold684:758456-996243 in wrong orientation according to WI_MRC-RH | 1 |
| 5:73318574-73678901 | scaffold10961:537785-898112 in wrong orientation according to MGI | 1 |
| 5:74145788-74276665 | scaffold39262:462967-593844 in wrong orientation according to WI_MRC-RH | 1 |
| 5:81672262-81787769 | scaffold5951:570183-676750 in wrong orientation according to WI_MRC-RH | 8 |
| 5:82365122-82844869 | scaffold578:729421-1209168 in wrong orientation according to WI_MRC-RH | 1 |
| 5:83585208-84389382 | scaffold5941.1:1-804175 in wrong orientation according to MGI | 1 |
| 5:86105008-86703983 | scaffold6359.0:1-598976 in wrong orientation according to MGI | 1 |
| 5:97987290-98296638 | scaffold6045.1:281919-591267 in wrong orientation according to WI_MRC-RH | 1 |
| 5:99399623-99534134 | scaffold8125:3336-137847 in wrong orientation according to WI_MRC-RH | 1 |
| 5:99773678-100032580 | scaffold2345.1:5813-257384 in wrong orientation according to WI_MRC-RH | 3 |
| 5:101220556-101994758 | scaffold4525:636223-1410425 in wrong orientation according to MGI | 1 |
| 5:111461264-111669504 | scaffold346:1428302-1636542 in wrong orientation according to WI_MRC-RH | 1 |
| 5:112026869-112289637 | scaffold346:815762-1078530 in wrong orientation according to WI_MRC-RH | 1 |
| 5:112304457-113106325 | scaffold346:1-801869 in wrong orientation according to MGI | 1 |
| 5:115095192-115902923 | scaffold4373.0:1889549-2697280 in wrong orientation according to MGI | 1 |
| 5:118593746-118685005 | scaffold14232.1:83800-175059 in wrong orientation according to MGI | 1 |
| 5:119111035-119361013 | scaffold10935:1586-251564 in wrong orientation according to MGI | 1 |
| 5:123151601-123930308 | scaffold4551.2:1-783554 in wrong orientation according to MGI | 2 |
| 5:126749379-127505902 | scaffold5936.0:1-756524 in wrong orientation according to WI_MRC-RH | 1 |
| 5:127524891-128508472 | scaffold971.2:1-983582 in wrong orientation according to MGI | 1 |
| 5:128508781-129061559 | scaffold17617:1-552779 in wrong orientation according to WI_MRC-RH | 1 |
| 5:130093266-130260243 | scaffold8007:887785-1054762 in wrong orientation according to WI_MRC-RH | 1 |
| 5:131284923-131542140 | scaffold4207:105915-363132 in wrong orientation according to MGI | 1 |
| 5:131543494-131832042 | scaffold4207:363133-651681 in wrong orientation according to MGI | 1 |
| 5:136438502-136841828 | scaffold3622.0:1-403327 in wrong orientation according to MGI | 1 |
| 5:139524260-140251961 | scaffold3622.1:2128948-2856649 in wrong orientation according to MGI | 1 |
| 5:141007514-141150618 | scaffold1503.5:1-143105 in wrong orientation according to WI_MRC-RH | 1 |
| 5:142797332-142983938 | scaffold2085.4:468204-654810 in wrong orientation according to MGI | 1 |
| 5:148278510-148548885 | scaffold3742.1:248-270623 in wrong orientation according to WI_MRC-RH | 1 |
| 5:152690732-153257516 | scaffold1206.0:1-566785 in wrong orientation according to MGI | 1 |
| 5:154691763-155175181 | scaffold432.1:1-483419 in wrong orientation according to WI_MRC-RH | 1 |
| 5:158524510-158798916 | scaffold8893.0:1-274407 in wrong orientation according to WI_MRC-RH | 1 |
| 5:159200123-159258322 | scaffold8893.0:669192-727391 in wrong orientation according to WI_MRC-RH | 1 |
| 5:159810861-159959575 | scaffold1880.0:546634-695348 in wrong orientation according to WI_MRC-RH | 1 |
| 5:163319449-163709013 | scaffold6779:626796-1016360 in wrong orientation according to MGI | 1 |
| 5:164325118-164624480 | scaffold5193:409159-708521 in wrong orientation according to WI_MRC-RH | 1 |
| 5:164675465-164818463 | scaffold5193:245817-375956 in wrong orientation according to WI_MRC-RH | 5 |
| 5:167534352-169296804 | scaffold137:4319-1768491 in wrong orientation according to MGI | 2 |
| 5:170001371-171060534 | scaffold2042.0:1-1059164 in wrong orientation according to MGI | 1 |
| 5:171585401-172093729 | scaffold118:38245-548114 in wrong orientation according to MGI | 2 |
Chromosome: 6
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 6:257765-387063 | scaffold9053:1-129299 in wrong orientation according to WI_MRC-RH | 1 |
| 6:5485476-5637289 | scaffold10920:1-151814 in wrong orientation according to WI_MRC-RH | 1 |
| 6:13607812-14270772 | scaffold4070:1-662961 in wrong orientation according to MGI | 1 |
| 6:22148712-22401952 | scaffold1058.2:1423309-1676549 in wrong orientation according to WI_MRC-RH | 1 |
| 6:26700673-27087869 | scaffold1937.0:1-387197 in wrong orientation according to WI_MRC-RH | 1 |
| 6:31939054-32465392 | scaffold2554:1-526339 in wrong orientation according to MGI | 1 |
| 6:34141552-35169911 | scaffold1702.2:1-1028360 in wrong orientation according to MGI | 1 |
| 6:36440668-37331634 | scaffold3931:1027051-1918017 in wrong orientation according to MGI | 1 |
| 6:40796949-41219148 | scaffold2895.0:549437-971636 in wrong orientation according to MGI | 1 |
| 6:41219736-41714654 | scaffold2895.0:52981-547899 in wrong orientation according to MGI | 1 |
| 6:42757914-43345486 | scaffold2266.2:83437-671009 in wrong orientation according to MGI | 1 |
| 6:43650920-43768660 | scaffold28040:1-117741 in wrong orientation according to WI_MRC-RH | 1 |
| 6:53665466-53769983 | scaffold11220.1:362692-467209 in wrong orientation according to WI_MRC-RH | 1 |
| 6:59434713-60012052 | scaffold389:1369253-1946592 in wrong orientation according to WI_MRC-RH | 1 |
| 6:61398485-61630623 | scaffold2098.3:1-232139 in wrong orientation according to WI_MRC-RH | 1 |
| 6:64656142-65797580 | scaffold1023:1-1141439 in wrong orientation according to WI_MRC-RH | 1 |
| 6:71596943-71809956 | scaffold308.0:600582-813595 in wrong orientation according to MGI | 1 |
| 6:73653179-74032066 | scaffold3068:1-378888 in wrong orientation according to WI_MRC-RH | 1 |
| 6:88590463-88742742 | scaffold3455.1:335077-487356 in wrong orientation according to WI_MRC-RH | 1 |
| 6:92748134-93640170 | scaffold3134.1:1-892037 in wrong orientation according to MGI | 1 |
| 6:94227005-94363826 | scaffold2621.1:299-137120 in wrong orientation according to MGI | 1 |
| 6:94516070-94631899 | scaffold33719:221626-337455 in wrong orientation according to MGI | 1 |
| 6:96382519-96532000 | scaffold14190.1:279988-429469 in wrong orientation according to MGI | 1 |
| 6:97712168-98481796 | scaffold2982.0:537757-1307385 in wrong orientation according to MGI | 1 |
| 6:99507990-100606525 | scaffold5556.0:1-1098536 in wrong orientation according to MGI | 1 |
| 6:100735026-101248994 | scaffold24830:1-513969 in wrong orientation according to WI_MRC-RH | 1 |
| 6:102500384-103779019 | scaffold2044.0:56497-1335132 in wrong orientation according to WI_MRC-RH | 1 |
| 6:104472064-105307816 | scaffold5491:1-835753 in wrong orientation according to MGI | 1 |
| 6:106048839-106370235 | scaffold644.1:1-321397 in wrong orientation according to MGI | 1 |
| 6:110267757-110492198 | scaffold9959.1:1-224442 in wrong orientation according to MGI | 1 |
| 6:120206642-121383122 | scaffold2096.0:388-1176868 in wrong orientation according to MGI | 1 |
| 6:121747989-122354648 | scaffold6285.2:38673-645332 in wrong orientation according to WI_MRC-RH | 1 |
| 6:122950025-123626034 | scaffold4289:11795-687804 in wrong orientation according to MGI | 1 |
| 6:127548712-127942128 | scaffold2268.2:1-394930 in wrong orientation according to MGI | 2 |
| 6:131850062-132503191 | scaffold10505.0:43973-697102 in wrong orientation according to MGI | 1 |
| 6:132746641-133357175 | scaffold11114.0:179696-790230 in wrong orientation according to WI_MRC-RH | 1 |
| 6:133357187-134089470 | scaffold26151:1-732284 in wrong orientation according to WI_MRC-RH | 1 |
| 6:134996938-136704894 | scaffold469.0:902733-2610689 in wrong orientation according to MGI | 1 |
| 6:138225739-138548852 | scaffold4857.0:1-323114 in wrong orientation according to WI_MRC-RH | 1 |
| 6:140399874-140790867 | scaffold11003:11861-400178 in wrong orientation according to MGI | 2 |
| 6:140790879-140941255 | scaffold12231:1-150377 in wrong orientation according to MGI | 1 |
| 6:159662751-160033620 | scaffold3232:317248-688117 in wrong orientation according to WI_MRC-RH | 1 |
| 6:160323835-160938622 | scaffold68.3:2346-617133 in wrong orientation according to MGI | 1 |
| 6:162306920-163689890 | scaffold11835:1-1382971 in wrong orientation according to MGI | 1 |
| 6:165319841-165529237 | scaffold5027:1630022-1839418 in wrong orientation according to MGI | 1 |
| 6:167852871-167970805 | scaffold4486:1-117935 in wrong orientation according to WI_MRC-RH | 1 |
Chromosome: 7
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 7:119350-691376 | scaffold2895.1:1-576819 in wrong orientation according to MGI | 2 |
| 7:1051103-1219214 | scaffold3955:1-170312 in wrong orientation according to WI_MRC-RH | 2 |
| 7:1689369-1897410 | scaffold1217.2:2642-210683 in wrong orientation according to MGI | 1 |
| 7:15224133-15557670 | scaffold9379:235170-568707 in wrong orientation according to MGI | 1 |
| 7:15618646-15797151 | scaffold9379:1-178506 in wrong orientation according to WI_MRC-RH | 1 |
| 7:15797163-16063902 | scaffold3312.2:263-267002 in wrong orientation according to MGI | 1 |
| 7:16835964-17180232 | scaffold442:313136-657404 in wrong orientation according to WI_MRC-RH | 1 |
| 7:24094947-24220207 | scaffold31000:1-125261 in wrong orientation according to WI_MRC-RH | 1 |
| 7:24506873-24634785 | scaffold7317:1-127913 in wrong orientation according to MGI | 1 |
| 7:25452637-25709309 | scaffold15828:1-254821 in wrong orientation according to MGI | 3 |
| 7:25709365-25758208 | scaffold3021.0:239956-288799 in wrong orientation according to WI_MRC-RH | 1 |
| 7:29373896-29709166 | scaffold11563:10527-345797 in wrong orientation according to WI_MRC-RH | 1 |
| 7:30309770-30607550 | scaffold8466:1409-299189 in wrong orientation according to WI_MRC-RH | 1 |
| 7:35361494-36813591 | scaffold1300.3:100-1452197 in wrong orientation according to MGI | 1 |
| 7:36813695-39102916 | scaffold1300.1:1-2289222 in wrong orientation according to MGI | 1 |
| 7:46863477-47453230 | scaffold9241:1-589754 in wrong orientation according to MGI | 1 |
| 7:47737154-48262552 | scaffold504.1:282449-809681 in wrong orientation according to MGI | 2 |
| 7:55369038-55742040 | scaffold849.1:761397-1134399 in wrong orientation according to MGI | 1 |
| 7:63093624-63667492 | scaffold2324:1-573869 in wrong orientation according to MGI | 1 |
| 7:70942574-71284165 | scaffold2962.0:1-341592 in wrong orientation according to MGI | 1 |
| 7:72782019-73714000 | scaffold751:1-931982 in wrong orientation according to WI_MRC-RH | 1 |
| 7:83421166-83547554 | scaffold31518:1-122459 in wrong orientation according to WI_MRC-RH | 6 |
| 7:91862621-92269600 | scaffold251:134310-535437 in wrong orientation according to MGI | 5 |
| 7:92290266-92729291 | scaffold9959.0:701880-1140905 in wrong orientation according to WI_MRC-RH | 1 |
| 7:98076548-98414287 | scaffold942:177596-515335 in wrong orientation according to WI_MRC-RH | 1 |
| 7:100419026-100940518 | scaffold4515.1:642-522134 in wrong orientation according to MGI | 1 |
| 7:103266269-103641089 | scaffold10:8181-383001 in wrong orientation according to MGI | 1 |
| 7:109422337-109654565 | scaffold7384.0:1-232229 in wrong orientation according to MGI | 1 |
| 7:123146417-123726981 | scaffold2458:1-580565 in wrong orientation according to MGI | 1 |
| 7:124461062-124972903 | scaffold4069.1:86311-598152 in wrong orientation according to MGI | 1 |
| 7:128050872-128467163 | scaffold4186:1763273-2179564 in wrong orientation according to WI_MRC-RH | 1 |
| 7:128890823-130233681 | scaffold4186:1-1342859 in wrong orientation according to MGI | 1 |
| 7:131911019-132572351 | scaffold7791.0:810490-1471822 in wrong orientation according to MGI | 1 |
| 7:132573664-133015184 | scaffold7791.0:368969-810489 in wrong orientation according to MGI | 1 |
| 7:134385155-134924621 | scaffold41.1:994418-1533884 in wrong orientation according to WI_MRC-RH | 1 |
| 7:138113363-138482584 | scaffold3282.3:1-369222 in wrong orientation according to MGI | 1 |
| 7:141618340-141823239 | scaffold1923:254209-459108 in wrong orientation according to WI_MRC-RH | 1 |
| 7:141838479-142092686 | scaffold1923:1-254208 in wrong orientation according to MGI | 1 |
| 7:142318978-142578212 | scaffold7742.1:420-259654 in wrong orientation according to WI_MRC-RH | 1 |
| 7:143340005-144256147 | scaffold5497:435252-1351394 in wrong orientation according to MGI | 1 |
| 7:146865686-147021306 | scaffold3957.0:667846-823466 in wrong orientation according to WI_MRC-RH | 1 |
| 7:148222252-149694677 | scaffold1796.1:529540-2001965 in wrong orientation according to MGI | 1 |
| 7:149869994-150515296 | scaffold3437.0:189698-835000 in wrong orientation according to MGI | 1 |
| 7:156881835-157787843 | scaffold1104:83412-977772 in wrong orientation according to MGI | 3 |
| 7:157811664-157941139 | scaffold25341:23120-152595 in wrong orientation according to WI_MRC-RH | 1 |
| 7:157941151-158001537 | scaffold5516.2:286251-346637 in wrong orientation according to WI_MRC-RH | 1 |
| 7:158281217-158545079 | scaffold3203:3374-267236 in wrong orientation according to WI_MRC-RH | 1 |
Chromosome: 8
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 8:1163664-1482656 | scaffold10542:52632-371624 in wrong orientation according to MGI | 1 |
| 8:8752206-9661654 | scaffold3235.4:1-910519 in wrong orientation according to MGI | 2 |
| 8:9946641-10335681 | scaffold4916:283103-672143 in wrong orientation according to MGI | 1 |
| 8:10337290-10987515 | scaffold4916:672763-1322988 in wrong orientation according to MGI | 1 |
| 8:10989198-11741243 | scaffold4916:1322989-2075034 in wrong orientation according to MGI | 1 |
| 8:13408433-13907304 | scaffold9860:1-498872 in wrong orientation according to WI_MRC-RH | 1 |
| 8:17541276-17993247 | scaffold620.0:1-451972 in wrong orientation according to MGI | 1 |
| 8:24410783-24432744 | scaffold2854.0:3351438-3373399 in wrong orientation according to WI_MRC-RH | 1 |
| 8:34028346-34630203 | scaffold4333:1-601858 in wrong orientation according to MGI | 1 |
| 8:42628220-43011414 | scaffold1486:1-383195 in wrong orientation according to WI_MRC-RH | 1 |
| 8:48778947-49148785 | scaffold785.0:549573-919411 in wrong orientation according to WI_MRC-RH | 1 |
| 8:49703295-50349757 | scaffold940.1:235-646697 in wrong orientation according to MGI | 1 |
| 8:50771495-51203383 | scaffold568:57075-488963 in wrong orientation according to MGI | 1 |
| 8:58266891-58465075 | scaffold1066.0:113808-311992 in wrong orientation according to WI_MRC-RH | 1 |
| 8:66909791-67191391 | scaffold82.0:1-281601 in wrong orientation according to MGI | 1 |
| 8:75278357-75439999 | scaffold1287.1:794921-956563 in wrong orientation according to MGI | 1 |
| 8:79619263-80103958 | scaffold4389:1-484696 in wrong orientation according to MGI | 1 |
| 8:80528004-80709291 | scaffold5358:415660-596947 in wrong orientation according to WI_MRC-RH | 1 |
| 8:81410026-81955270 | scaffold4386.0:1-545245 in wrong orientation according to MGI | 1 |
| 8:88567099-88841130 | scaffold7248:1-274032 in wrong orientation according to WI_MRC-RH | 1 |
| 8:90104235-90403165 | scaffold20955.1:10239-309169 in wrong orientation according to WI_MRC-RH | 1 |
| 8:93017187-93179976 | scaffold732:1-162790 in wrong orientation according to WI_MRC-RH | 1 |
| 8:98309363-98435313 | scaffold42184:1-125951 in wrong orientation according to MGI | 1 |
| 8:104143852-104601029 | scaffold6579.1:1-457178 in wrong orientation according to MGI | 1 |
| 8:104601743-104911757 | scaffold6579.1:457179-767193 in wrong orientation according to MGI | 1 |
| 8:104913471-105479392 | scaffold6579.1:767194-1333115 in wrong orientation according to MGI | 1 |
| 8:106336469-107307773 | scaffold962.4:1-971305 in wrong orientation according to MGI | 1 |
| 8:118023987-118969598 | scaffold1583.2:1594200-2539001 in wrong orientation according to WI_MRC-RH | 4 |
| 8:118970061-119585201 | scaffold1583.2:2539002-3154142 in wrong orientation according to MGI | 1 |
| 8:119642593-120105713 | scaffold716:122819-585939 in wrong orientation according to MGI | 1 |
| 8:122138053-122339455 | scaffold41.0:1-201403 in wrong orientation according to MGI | 1 |
| 8:124721293-124785179 | scaffold6461:619172-683058 in wrong orientation according to WI_MRC-RH | 1 |
| 8:125199939-125611197 | scaffold13796:1-411259 in wrong orientation according to WI_MRC-RH | 1 |
| 8:129497700-130125504 | scaffold3213:1-627805 in wrong orientation according to MGI | 1 |
| 8:132065227-132589017 | scaffold3213:2562381-3086171 in wrong orientation according to WI_MRC-RH | 1 |
| 8:137246129-137298713 | scaffold43152:1-52585 in wrong orientation according to WI_MRC-RH | 1 |
| 8:140656857-140962601 | scaffold7742.2:1-305745 in wrong orientation according to WI_MRC-RH | 1 |
| 8:140962613-144030706 | scaffold5464.1:1-3068094 in wrong orientation according to MGI | 1 |
Chromosome: 9
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| 9:5033275-5207081 | scaffold5703.0:1-173807 in wrong orientation according to WI_MRC-RH | 1 |
| 9:5367282-5547047 | scaffold1435:1-179766 in wrong orientation according to WI_MRC-RH | 1 |
| 9:5547778-5629770 | scaffold2027.1:1-81993 in wrong orientation according to MGI | 1 |
| 9:6621761-6794706 | scaffold4456:1-172946 in wrong orientation according to WI_MRC-RH | 1 |
| 9:13725205-13756022 | C1663915:1-30818 in wrong orientation according to WI_MRC-RH | 1 |
| 9:29990466-31692013 | scaffold2774.0:1-1701548 in wrong orientation according to MGI | 1 |
| 9:31692280-32914970 | scaffold3292:1-1222691 in wrong orientation according to MGI | 1 |
| 9:33567904-34146654 | scaffold674.2:433769-1012519 in wrong orientation according to MGI | 1 |
| 9:34146953-34450457 | scaffold674.2:130264-433768 in wrong orientation according to WI_MRC-RH | 1 |
| 9:35380810-35897122 | scaffold2813:1-516313 in wrong orientation according to MGI | 1 |
| 9:38752959-39245948 | scaffold10800:458740-951729 in wrong orientation according to MGI | 1 |
| 9:39255719-39463465 | scaffold10800:250993-458739 in wrong orientation according to MGI | 1 |
| 9:42188340-42293189 | scaffold9432.1:46541-151390 in wrong orientation according to WI_MRC-RH | 1 |
| 9:43723617-44109352 | scaffold5313:1-385736 in wrong orientation according to WI_MRC-RH | 1 |
| 9:46063923-46602419 | scaffold1973.0:1-538497 in wrong orientation according to MGI | 1 |
| 9:51144769-52106508 | scaffold6449.1:1-961740 in wrong orientation according to MGI | 1 |
| 9:53552623-54312262 | scaffold18619:1-759640 in wrong orientation according to MGI | 1 |
| 9:57022901-57543581 | scaffold2603:397265-917945 in wrong orientation according to WI_MRC-RH | 1 |
| 9:57543678-58989134 | scaffold3022.1:1-1445457 in wrong orientation according to MGI | 1 |
| 9:59101632-59281394 | scaffold8053.1:62294-242056 in wrong orientation according to MGI | 1 |
| 9:67686650-68812295 | scaffold5366.1:1754812-2880457 in wrong orientation according to MGI | 1 |
| 9:69997342-70249753 | scaffold16359.0:366121-618532 in wrong orientation according to WI_MRC-RH | 1 |
| 9:70250201-70695560 | scaffold16359.0:618533-1063892 in wrong orientation according to MGI | 1 |
| 9:72284376-73908062 | scaffold1401.0:215486-1839172 in wrong orientation according to MGI | 1 |
| 9:77048811-77723814 | scaffold887:1293517-1968520 in wrong orientation according to MGI | 1 |
| 9:77947407-78283187 | scaffold123.3:1-335781 in wrong orientation according to WI_MRC-RH | 1 |
| 9:78785703-78954199 | scaffold123.1:1-168497 in wrong orientation according to WI_MRC-RH | 1 |
| 9:80493444-81422187 | scaffold4195.1:11257-940000 in wrong orientation according to MGI | 1 |
| 9:82360610-82492134 | scaffold2334:112389-243913 in wrong orientation according to MGI | 1 |
| 9:83748001-84357125 | scaffold7714.0:1-609125 in wrong orientation according to MGI | 1 |
| 9:84944554-84971043 | C1236025:1-2353 in wrong orientation according to WI_MRC-RH | 2 |
| 9:84990537-85559048 | scaffold10699:1-565639 in wrong orientation according to WI_MRC-RH | 5 |
| 9:86966850-87275512 | scaffold123.5:1-308663 in wrong orientation according to MGI | 1 |
| 9:98499757-98667406 | scaffold7565.1:1-167650 in wrong orientation according to WI_MRC-RH | 1 |
| 9:105960192-106709112 | scaffold6564:1-748921 in wrong orientation according to WI_MRC-RH | 1 |
| 9:107504105-108206289 | scaffold1010.1:789919-1491605 in wrong orientation according to MGI | 3 |
| 9:114056083-114319286 | scaffold15801:1-263204 in wrong orientation according to WI_MRC-RH | 1 |
| 9:114319298-114631358 | scaffold30565:1-312061 in wrong orientation according to MGI | 1 |
| 9:115365045-115430094 | scaffold920.2:1-65050 in wrong orientation according to WI_MRC-RH | 1 |
| 9:115430106-115806079 | scaffold8963:1-375974 in wrong orientation according to WI_MRC-RH | 1 |
| 9:117519820-118327753 | scaffold2553.2:10025-817958 in wrong orientation according to MGI | 1 |
| 9:121592883-122797667 | scaffold10410:1-1204785 in wrong orientation according to MGI | 1 |
| 9:129549490-130305730 | scaffold703:2352110-3108350 in wrong orientation according to MGI | 1 |
| 9:130976892-132417729 | scaffold703:246175-1687012 in wrong orientation according to MGI | 1 |
| 9:133397261-133458410 | C1677753:1-61150 in wrong orientation according to WI_MRC-RH | 1 |
| 9:135119059-135825220 | scaffold9435:184053-890457 in wrong orientation according to MGI | 2 |
| 9:135832066-136016117 | scaffold9435:1-184052 in wrong orientation according to MGI | 1 |
Chromosome: X
| Region | Comment | Components in FPC/Scaffold region |
|---|---|---|
| X:3002751-3104276 | scaffold4573.0:2521-104046 in wrong orientation according to WI_MRC-RH | 1 |
| X:8359468-8664585 | scaffold4232:32090-337207 in wrong orientation according to MGI | 1 |
| X:12706831-12850867 | scaffold807.1:1-144037 in wrong orientation according to MGI | 1 |
| X:16413077-17060781 | scaffold376.2:216856-864560 in wrong orientation according to MGI | 1 |
| X:56295182-56628990 | scaffold9472.1:1-333809 in wrong orientation according to MGI | 1 |
| X:60060339-60194286 | scaffold3182:121034-254981 in wrong orientation according to WI_MRC-RH | 1 |
| X:60207170-60574224 | scaffold3091:1-367055 in wrong orientation according to WI_MRC-RH | 1 |
| X:71549379-71857358 | scaffold2566:522233-837406 in wrong orientation according to MGI | 2 |
| X:73482258-73801885 | scaffold3936.0:2941-322568 in wrong orientation according to WI_MRC-RH | 1 |
| X:76757709-76870750 | scaffold6289.0:4145-117186 in wrong orientation according to WI_MRC-RH | 1 |
| X:84551794-84601274 | scaffold8289:95567-145047 in wrong orientation according to MGI | 1 |
| X:99277766-99528370 | scaffold6927.1:1-250605 in wrong orientation according to WI_MRC-RH | 1 |
| X:99715778-99986792 | scaffold10626:42554-313568 in wrong orientation according to WI_MRC-RH | 1 |
| X:100153623-100373094 | scaffold10626:477356-696827 in wrong orientation according to MGI | 1 |
| X:104887392-104903217 | scaffold7315:154401-170226 in wrong orientation according to MGI | 1 |
| X:107451226-107873566 | scaffold7585.2:4769-427109 in wrong orientation according to MGI | 1 |
| X:108147385-108170929 | scaffold19964:2426-25970 in wrong orientation according to WI_MRC-RH | 1 |
| X:110362363-110429982 | scaffold11647:28647-96266 in wrong orientation according to MGI | 1 |
| X:110627314-110906371 | scaffold3689:985233-1264290 in wrong orientation according to MGI | 1 |
| X:111159493-111397804 | scaffold3689:507191-745502 in wrong orientation according to MGI | 1 |
| X:111401425-111907164 | scaffold3689:1-506832 in wrong orientation according to MGI | 2 |
| X:113522199-113876386 | scaffold25312:10868-365055 in wrong orientation according to MGI | 1 |
| X:132617692-132724600 | scaffold10449:1-106909 in wrong orientation according to MGI | 1 |
| X:147471170-147674168 | scaffold6370:18096-221094 in wrong orientation according to WI_MRC-RH | 1 |
| X:149549640-149820225 | scaffold6084:2056-272641 in wrong orientation according to MGI | 1 |
| X:153395856-154207250 | scaffold6796:462582-1273976 in wrong orientation according to MGI | 1 |
| X:154208012-154667196 | scaffold6796:3397-462581 in wrong orientation according to WI_MRC-RH | 1 |
| X:155746962-155905981 | scaffold2712.0:554208-713227 in wrong orientation according to WI_MRC-RH | 1 |
| X:156463529-156830827 | scaffold2966.1:1-367299 in wrong orientation according to WI_MRC-RH | 1 |
| X:165000759-165188928 | scaffold3753:8968-197137 in wrong orientation according to WI_MRC-RH | 1 |
| X:170436415-170609043 | scaffold16359.1:40443-213071 in wrong orientation according to WI_MRC-RH | 1 |
| X:176452215-176583319 | scaffold235.2:1-131105 in wrong orientation according to WI_MRC-RH | 1 |
| X:182769228-183283361 | scaffold9021:613482-1127615 in wrong orientation according to MGI | 1 |