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Overview

Punchlist for: Clone-contig misorientation

Chromosome: 1

RegionCommentComponents in FPC/Scaffold region
1:1157447-1927561scaffold5895:236376-1006490 in wrong orientation according to MGI1
1:1929682-2147269scaffold5895:18788-236375 in wrong orientation according to WI_MRC-RH1
1:8848706-9410398scaffold1760:685262-1246954 in wrong orientation according to WI_MRC-RH1
1:10683588-11250389scaffold3495:1-566802 in wrong orientation according to WI_MRC-RH1
1:14500943-15006066scaffold4814.0:252966-758089 in wrong orientation according to MGI1
1:16812642-17037373scaffold6504.1:1-224732 in wrong orientation according to MGI1
1:17487295-18241818scaffold6504.1:656837-1411360 in wrong orientation according to WI_MRC-RH1
1:19219216-20147283scaffold294:297930-1225997 in wrong orientation according to MGI1
1:20193622-20225690scaffold294:1249166-1281234 in wrong orientation according to WI_MRC-RH1
1:24417964-25175110scaffold2251.0:108010-865156 in wrong orientation according to MGI1
1:37686531-37852055scaffold2974.2:1134662-1300186 in wrong orientation according to WI_MRC-RH1
1:37852456-40006979scaffold519:1-2154524 in wrong orientation according to MGI1
1:40007314-41094277scaffold519:2154525-3266584 in wrong orientation according to MGI2
1:58338010-59741201scaffold988:1-1403192 in wrong orientation according to WI_MRC-RH1
1:60430347-61608215scaffold1537.1:327-1178195 in wrong orientation according to MGI1
1:61608227-62647969scaffold363:1-1039743 in wrong orientation according to MGI1
1:62792062-63013546scaffold26453:1-221485 in wrong orientation according to MGI1
1:63051763-63109896scaffold394.0:5068-57723 in wrong orientation according to WI_MRC-RH4
1:67214835-67804065scaffold1422:748802-1338032 in wrong orientation according to MGI1
1:67971242-68083834scaffold1422:1505718-1619901 in wrong orientation according to WI_MRC-RH2
1:68403395-69980416scaffold3020:134476-1711497 in wrong orientation according to MGI1
1:75860765-76796449scaffold827.0:1-935685 in wrong orientation according to MGI1
1:77920974-78356292scaffold3509:1-435319 in wrong orientation according to WI_MRC-RH1
1:79878008-80194542scaffold44799:1-316535 in wrong orientation according to MGI1
1:80532773-80616831scaffold3992.1:1-84059 in wrong orientation according to WI_MRC-RH1
1:84067778-85064894scaffold1712.0:493001-1490117 in wrong orientation according to MGI1
1:85065128-85554184scaffold1712.0:1-493000 in wrong orientation according to WI_MRC-RH2
1:86754291-87612033scaffold1740.0:1-869777 in wrong orientation according to WI_MRC-RH2
1:89905012-90043553scaffold837.0:1585340-1723881 in wrong orientation according to MGI1
1:96474756-96855009scaffold1034.4:1-380254 in wrong orientation according to MGI1
1:98646244-98646212scaffold5373:1-1334914 in wrong orientation according to MGI0
1:106741463-107410774scaffold11808:141151-810462 in wrong orientation according to WI_MRC-RH1
1:114685254-115683577scaffold67.0:570780-1569103 in wrong orientation according to MGI1
1:116272315-117042155scaffold1066.1:1-769841 in wrong orientation according to MGI1
1:120446048-120756805scaffold12064:1-310758 in wrong orientation according to WI_MRC-RH1
1:126603425-126603413scaffold1875:1-800315 in wrong orientation according to MGI0
1:133814200-134837783scaffold2706:1728003-2751586 in wrong orientation according to MGI1
1:141327628-142309520scaffold5107.1:578538-1560430 in wrong orientation according to MGI1
1:143549183-143593481scaffold22757:560645-604943 in wrong orientation according to WI_MRC-RH1
1:143682566-144188080scaffold22757:1-505515 in wrong orientation according to MGI1
1:144188092-144386506scaffold16663.2:1-198415 in wrong orientation according to WI_MRC-RH1
1:144387614-144467091scaffold16663.2:198416-277893 in wrong orientation according to MGI1
1:148509102-148782230scaffold7201.1:1-273129 in wrong orientation according to WI_MRC-RH1
1:151628265-152307484scaffold874:1-681987 in wrong orientation according to WI_MRC-RH2
1:153040540-153496810scaffold7971.1:1-456271 in wrong orientation according to WI_MRC-RH1
1:158311224-158612689scaffold3305.1:60190-361655 in wrong orientation according to WI_MRC-RH1
1:158674001-159607593scaffold4350.1:60192-993784 in wrong orientation according to MGI1
1:165391575-165853396scaffold1250.0:1-461822 in wrong orientation according to WI_MRC-RH1
1:167252965-167733545scaffold4634.0:252588-733168 in wrong orientation according to WI_MRC-RH1
1:168215300-169323232scaffold2005:1-1107933 in wrong orientation according to MGI1
1:182845713-184091949scaffold9916:1-1246237 in wrong orientation according to MGI1
1:186484975-186795583scaffold19851:1-310609 in wrong orientation according to MGI1
1:187631025-188056121scaffold3228.1:1-425097 in wrong orientation according to WI_MRC-RH1
1:193395171-194203010scaffold8532:1-807840 in wrong orientation according to MGI1
1:194820506-195722062scaffold67.1:1-901557 in wrong orientation according to MGI1
1:196043913-196945760scaffold10583.1:321071-1222918 in wrong orientation according to MGI1
1:197683709-199730578scaffold1683.3:1-2046870 in wrong orientation according to MGI1
1:199730590-199808191scaffold43099.1:1-77602 in wrong orientation according to WI_MRC-RH1
1:199808658-200209747scaffold18007:10309-411398 in wrong orientation according to WI_MRC-RH1
1:200810777-201324036scaffold3447:768183-1281442 in wrong orientation according to WI_MRC-RH1
1:201325864-202094045scaffold3447:1-768182 in wrong orientation according to MGI1
1:207006731-207781021scaffold4242.1:1-774291 in wrong orientation according to MGI1
1:207790151-207985751scaffold4242.1:775484-971084 in wrong orientation according to WI_MRC-RH1
1:212331812-212977011scaffold741.1:376614-1023927 in wrong orientation according to MGI2

Chromosome: 10

RegionCommentComponents in FPC/Scaffold region
10:5039772-5717267scaffold13010:100522-778017 in wrong orientation according to WI_MRC-RH1
10:12773012-13375193scaffold4865.3:1-602182 in wrong orientation according to MGI1
10:22002877-22757359scaffold6062:1-754483 in wrong orientation according to MGI1
10:24378771-24864222scaffold315:1588393-2073844 in wrong orientation according to WI_MRC-RH1
10:24866147-26089380scaffold315:2073845-3297078 in wrong orientation according to MGI1
10:26095239-26402377scaffold8882:1-307139 in wrong orientation according to WI_MRC-RH1
10:29920862-30471945scaffold6495.1:1238751-1789834 in wrong orientation according to MGI1
10:41879837-43051889scaffold1398.0:1-1172053 in wrong orientation according to WI_MRC-RH1
10:43052453-43593573scaffold1398.0:1172054-1713174 in wrong orientation according to WI_MRC-RH1
10:43897603-44159683scaffold6715.1:534363-796443 in wrong orientation according to WI_MRC-RH1
10:44735863-45436848scaffold13366:1-700986 in wrong orientation according to WI_MRC-RH1
10:46527015-46773065scaffold837.1:479-246529 in wrong orientation according to WI_MRC-RH1
10:59116622-59716858scaffold6733:268789-869025 in wrong orientation according to MGI1
10:62430673-62839204scaffold815.0:1-410171 in wrong orientation according to WI_MRC-RH2
10:62840034-62983096scaffold815.0:410172-553234 in wrong orientation according to WI_MRC-RH1
10:69331503-69813015scaffold6614.1:1-481513 in wrong orientation according to MGI1
10:75895563-76855207scaffold1536.0:1-959645 in wrong orientation according to WI_MRC-RH1
10:84911762-85279718scaffold1280:914431-1282387 in wrong orientation according to MGI1
10:88085966-88404782scaffold387:1-318817 in wrong orientation according to WI_MRC-RH1
10:88405609-88556162scaffold387:321714-472267 in wrong orientation according to WI_MRC-RH1
10:90377408-90767391scaffold5815:49263-439246 in wrong orientation according to MGI1
10:90821999-91773668scaffold1314.1:331-952000 in wrong orientation according to MGI1
10:91784296-92080317scaffold1067.3:223-296244 in wrong orientation according to WI_MRC-RH1
10:93455458-94183101scaffold8135:1-727644 in wrong orientation according to MGI1
10:96183101-96448639scaffold526.1:896108-1161646 in wrong orientation according to WI_MRC-RH1
10:99366674-99513277scaffold8900.1:1-146604 in wrong orientation according to MGI1
10:101646477-102249420scaffold237.1:1134843-1737786 in wrong orientation according to WI_MRC-RH1
10:102525664-104398122scaffold237.1:2012927-3885385 in wrong orientation according to MGI1
10:104906350-105720599scaffold237.1:4378129-5192378 in wrong orientation according to MGI1
10:106909977-107745392scaffold6264:1-835416 in wrong orientation according to MGI1
10:115411452-116170116scaffold2894.2:1-758665 in wrong orientation according to MGI1
10:118541372-118867921scaffold962.1:1-326550 in wrong orientation according to MGI1
10:120185634-121292889scaffold2669:1154854-2262109 in wrong orientation according to WI_MRC-RH1
10:122715255-123058176scaffold808.1:69061-411982 in wrong orientation according to MGI1
10:132758026-133851899scaffold3115:2200447-3297987 in wrong orientation according to MGI2
10:133865612-134380838scaffold46.1:1-515227 in wrong orientation according to WI_MRC-RH1
10:142634991-142877660scaffold2660.1:194397-437066 in wrong orientation according to MGI1
10:144319735-144559511scaffold206.1:1-239777 in wrong orientation according to WI_MRC-RH1

Chromosome: 11

RegionCommentComponents in FPC/Scaffold region
11:360682-587033scaffold402:1-226352 in wrong orientation according to WI_MRC-RH1
11:3571407-3728548scaffold2034.0:1-157142 in wrong orientation according to WI_MRC-RH1
11:3729309-4447692scaffold7163.1:1-718384 in wrong orientation according to MGI1
11:10446067-10971979scaffold1284:1-525913 in wrong orientation according to MGI1
11:17479182-18141925scaffold6401.0:1-662744 in wrong orientation according to MGI1
11:18647598-18786479scaffold216.0:1-138882 in wrong orientation according to MGI1
11:20198873-20789581scaffold3561:1-590709 in wrong orientation according to MGI1
11:25478560-25809907scaffold11260:481885-813232 in wrong orientation according to MGI1
11:27680850-28085321scaffold3407.1:1-404472 in wrong orientation according to MGI1
11:31234265-31434826scaffold2105.0:1-200562 in wrong orientation according to WI_MRC-RH1
11:45597646-46337927scaffold3112.0:1-745355 in wrong orientation according to WI_MRC-RH2
11:49490402-49983924scaffold4007.0:417253-910775 in wrong orientation according to WI_MRC-RH1
11:54354717-55184063scaffold5971:290274-1119620 in wrong orientation according to MGI1
11:55184407-55336168scaffold5971:138512-290273 in wrong orientation according to WI_MRC-RH1
11:55560017-55830032scaffold257.0:1-270016 in wrong orientation according to MGI1
11:55901682-56687421scaffold4476:2718-788457 in wrong orientation according to MGI1
11:57813044-59095663scaffold1000.1:1-1282620 in wrong orientation according to MGI1
11:59096041-59398049scaffold17159:1-302009 in wrong orientation according to WI_MRC-RH1
11:59398261-59918218scaffold17159:302010-821967 in wrong orientation according to MGI1
11:59949274-60446278scaffold8599:1-497005 in wrong orientation according to MGI1
11:62240351-62412061scaffold2372.2:92879-264589 in wrong orientation according to WI_MRC-RH1
11:62412784-62505889scaffold2372.2:465-92878 in wrong orientation according to WI_MRC-RH3
11:62508975-62759801scaffold63:1-260105 in wrong orientation according to WI_MRC-RH2
11:62855139-63105695scaffold63:345000-595556 in wrong orientation according to MGI1
11:63441264-63716477scaffold14534:1-275214 in wrong orientation according to WI_MRC-RH1
11:66429919-66972315scaffold1310.0:230552-772948 in wrong orientation according to MGI1
11:73366906-75480885scaffold1524.1:1058937-3172916 in wrong orientation according to MGI1
11:75481439-75723402scaffold1524.1:3176129-3418092 in wrong orientation according to MGI1
11:75744727-76242559scaffold1524.1:3420874-3922210 in wrong orientation according to MGI2
11:76309730-76601785scaffold14398:1-292056 in wrong orientation according to WI_MRC-RH1
11:76602576-77123780scaffold14398:292057-813261 in wrong orientation according to MGI1
11:77792080-78423401scaffold3553:1-631322 in wrong orientation according to MGI1
11:80835443-81589712scaffold2386.0:235026-989295 in wrong orientation according to MGI1
11:83243254-84146696scaffold9471:12699-916141 in wrong orientation according to MGI1
11:87439528-89042241scaffold263.1:1245931-2848644 in wrong orientation according to MGI1
11:90947098-91288004scaffold18908:1-340907 in wrong orientation according to MGI1
11:91422758-92114533scaffold5398:1-691776 in wrong orientation according to MGI1
11:92266413-94527911scaffold5822.2:1-2262551 in wrong orientation according to MGI2
11:95521930-95950060scaffold5298.2:993686-1421816 in wrong orientation according to MGI1
11:96164236-97174949scaffold2524.2:92084-1102797 in wrong orientation according to MGI1
11:97411785-97479860scaffold2524.2:1333163-1407716 in wrong orientation according to WI_MRC-RH2
11:103801968-104094360scaffold1067.5:2090681-2383073 in wrong orientation according to MGI1
11:105589170-105618227scaffold1067.5:3859349-3888406 in wrong orientation according to WI_MRC-RH1
11:106408118-106912855scaffold2870:1-511705 in wrong orientation according to MGI4
11:110980385-111335539scaffold3899.2:584203-939357 in wrong orientation according to MGI1
11:111337209-111624235scaffold3899.2:297176-584202 in wrong orientation according to MGI1
11:112254208-112875779scaffold2529.0:313215-934786 in wrong orientation according to MGI1
11:112881035-113056125scaffold2529.0:934787-1109877 in wrong orientation according to WI_MRC-RH1
11:115336363-115674776scaffold1720.1:26603-365016 in wrong orientation according to WI_MRC-RH1
11:115676791-115923947scaffold1720.1:365017-612173 in wrong orientation according to MGI1
11:116996950-117881878scaffold1503:338262-1223190 in wrong orientation according to MGI1
11:118668672-118759639scaffold792:1-90968 in wrong orientation according to WI_MRC-RH1
11:118766129-120645027scaffold1638.1:196-1879094 in wrong orientation according to MGI1
11:121076759-121842958scaffold10101.0:1-766200 in wrong orientation according to MGI1
11:122530697-122705700scaffold13621.0:1-175004 in wrong orientation according to MGI1
11:122928593-123840054scaffold8676:1-911462 in wrong orientation according to MGI1
11:123843631-124392835scaffold28473:1-549205 in wrong orientation according to MGI1
11:125438349-126009425scaffold17050:1-569922 in wrong orientation according to MGI3
11:127686486-128249251scaffold1977:993908-1556673 in wrong orientation according to MGI1
11:131068207-131381029scaffold24400:1-312823 in wrong orientation according to MGI1
11:132388467-133547045scaffold2726:1001619-2160197 in wrong orientation according to MGI1
11:133909825-134036539scaffold2726:2517610-2644324 in wrong orientation according to MGI1

Chromosome: 12

RegionCommentComponents in FPC/Scaffold region
12:195718-418618scaffold68:341052-563952 in wrong orientation according to WI_MRC-RH1
12:1245410-1611435scaffold8004.0:741249-1106563 in wrong orientation according to WI_MRC-RH3
12:9156169-9594378scaffold8063.1:202799-641008 in wrong orientation according to MGI1
12:10412495-11208309scaffold10273:1-798254 in wrong orientation according to MGI2
12:20075797-20543858scaffold10444:25611-493672 in wrong orientation according to WI_MRC-RH1
12:26221877-26426959scaffold2976.0:1-205083 in wrong orientation according to MGI1
12:30634132-31327478scaffold4827.1:226765-920111 in wrong orientation according to MGI1
12:31556891-32362363scaffold4827.0:1-805473 in wrong orientation according to MGI1
12:32838208-32995960scaffold16224.0:55205-212957 in wrong orientation according to WI_MRC-RH1
12:34109902-34638965scaffold117.2:1-529064 in wrong orientation according to WI_MRC-RH1
12:35350480-35738960scaffold2266.0:381678-770158 in wrong orientation according to MGI1
12:35740192-36121868scaffold2266.0:1-381677 in wrong orientation according to MGI1
12:39226991-40178366scaffold1801.2:543572-1494947 in wrong orientation according to MGI1
12:40737638-42237004scaffold334.0:1-1499367 in wrong orientation according to MGI1
12:45522561-45956703scaffold11402.1:17767-451909 in wrong orientation according to WI_MRC-RH1
12:53719996-54051867scaffold3214:209738-541609 in wrong orientation according to MGI1
12:58937928-59346110scaffold13368:1-408183 in wrong orientation according to WI_MRC-RH1
12:59904775-60158520scaffold87:706888-960633 in wrong orientation according to WI_MRC-RH1
12:61529481-62204613scaffold5769.1:1-675133 in wrong orientation according to MGI1
12:74391020-74786261scaffold6716.0:1-395242 in wrong orientation according to WI_MRC-RH1
12:88693409-90420189scaffold452.2:1179749-2906529 in wrong orientation according to MGI1
12:90421400-90547177scaffold452.2:2906530-3031097 in wrong orientation according to WI_MRC-RH3
12:93760728-94207279scaffold24913:1-446552 in wrong orientation according to WI_MRC-RH1
12:98979146-99248411scaffold289.2:1-266732 in wrong orientation according to WI_MRC-RH3
12:105512251-106421526scaffold618:1-915727 in wrong orientation according to WI_MRC-RH2
12:106423887-107226245scaffold618:915728-1718086 in wrong orientation according to WI_MRC-RH1
12:110613233-112442250scaffold1709:170143-2000207 in wrong orientation according to MGI2
12:112634732-112728283scaffold19167:18615-112166 in wrong orientation according to WI_MRC-RH1
12:114946770-115210262scaffold853.0:1-263493 in wrong orientation according to WI_MRC-RH1
12:119730747-120071218scaffold28874:215387-555858 in wrong orientation according to MGI1
12:121021135-121156819scaffold16856:1-135685 in wrong orientation according to WI_MRC-RH1
12:121933738-122122862scaffold2733.0:1-207895 in wrong orientation according to WI_MRC-RH2
12:122431575-123006265scaffold2733.0:501352-1076042 in wrong orientation according to WI_MRC-RH1
12:123105531-123266115scaffold3999.2:1-160585 in wrong orientation according to WI_MRC-RH1

Chromosome: 13

RegionCommentComponents in FPC/Scaffold region
13:1235784-1684069scaffold214:257999-706284 in wrong orientation according to WI_MRC-RH1
13:2480761-3543228scaffold2023:470703-1537600 in wrong orientation according to MGI2
13:15905370-16079552scaffold3232.0:1284220-1458402 in wrong orientation according to WI_MRC-RH1
13:19506821-19982409scaffold2893:1-475589 in wrong orientation according to WI_MRC-RH1
13:21653259-21728745scaffold4875:1-75487 in wrong orientation according to WI_MRC-RH1
13:22618086-22814841scaffold1780.1:191769-379713 in wrong orientation according to WI_MRC-RH3
13:23023127-23222356scaffold3083:13314-212543 in wrong orientation according to WI_MRC-RH1
13:23895712-24201565scaffold3083:888530-1194383 in wrong orientation according to WI_MRC-RH1
13:26733776-27020304scaffold1104:1-286529 in wrong orientation according to WI_MRC-RH1
13:27125312-27314845scaffold14488:1-189534 in wrong orientation according to WI_MRC-RH1
13:28127064-29329346scaffold12682.1:1-1202283 in wrong orientation according to MGI1
13:30447982-33367011scaffold157.1:189634-3113780 in wrong orientation according to MGI2
13:46472164-46935410scaffold832.0:1013557-1476803 in wrong orientation according to MGI1
13:48787225-49299356scaffold537.1:436682-948813 in wrong orientation according to MGI1
13:50637029-52266286scaffold290:898771-2528028 in wrong orientation according to MGI1
13:55163590-55392442scaffold10869.1:1-228853 in wrong orientation according to WI_MRC-RH1
13:55393446-57103812scaffold10869.1:228854-1939220 in wrong orientation according to MGI1
13:64861330-64896394scaffold2145:3576-38640 in wrong orientation according to MGI1
13:65370844-65418624scaffold1453:1-47781 in wrong orientation according to WI_MRC-RH1
13:69709442-69993353scaffold2107:84107-368018 in wrong orientation according to WI_MRC-RH1
13:71815134-71930279scaffold3779:668839-783984 in wrong orientation according to WI_MRC-RH1
13:75929657-76737279scaffold2927:1-824854 in wrong orientation according to MGI2
13:77071075-77599286scaffold4806:1-528212 in wrong orientation according to MGI1
13:79491016-80281052scaffold445:195-882990 in wrong orientation according to MGI2
13:81807506-82209462scaffold54.0:1-401957 in wrong orientation according to MGI1
13:90431440-90556274scaffold11873.1:1-124835 in wrong orientation according to WI_MRC-RH1
13:97683347-98228326scaffold69.0:893206-1438185 in wrong orientation according to WI_MRC-RH1
13:98382718-99140482scaffold2043.3:154097-911861 in wrong orientation according to MGI1
13:100581961-100894149scaffold8109.0:1-312189 in wrong orientation according to MGI1
13:102237147-103032801scaffold1704:1288764-2084418 in wrong orientation according to MGI1
13:103033350-103782109scaffold1704:2084419-2833178 in wrong orientation according to MGI1
13:109158643-109196139scaffold10917:1-37497 in wrong orientation according to MGI1
13:109354436-109399160scaffold9803:1-44725 in wrong orientation according to MGI1
13:109414879-109431728scaffold8401:1-16850 in wrong orientation according to MGI1
13:113286163-113761530scaffold7628:1-475368 in wrong orientation according to WI_MRC-RH1
13:114618797-115159710scaffold1974.1:492300-1033213 in wrong orientation according to MGI1
13:121004957-122306114scaffold3386.0:1-1301158 in wrong orientation according to MGI1
13:123650510-123915307scaffold20670:1-264798 in wrong orientation according to WI_MRC-RH1
13:129987061-130453330scaffold2827:151118-617387 in wrong orientation according to WI_MRC-RH1
13:130602104-130943655scaffold13762:1-341552 in wrong orientation according to WI_MRC-RH1

Chromosome: 14

RegionCommentComponents in FPC/Scaffold region
14:5013282-5710694scaffold1863:1-700578 in wrong orientation according to WI_MRC-RH2
14:13959108-14959662scaffold313:508967-1509521 in wrong orientation according to MGI1
14:19855179-20513815scaffold7406:203120-861756 in wrong orientation according to MGI1
14:22754970-24177569scaffold1380.1:1642840-3067413 in wrong orientation according to MGI2
14:24192836-25597998scaffold1380.1:3067414-4481077 in wrong orientation according to MGI3
14:27051963-28596459scaffold871:173599-1718095 in wrong orientation according to MGI1
14:29441031-29796502scaffold9249:1-355472 in wrong orientation according to WI_MRC-RH1
14:42009915-42639364scaffold7232:1-629450 in wrong orientation according to WI_MRC-RH1
14:42803462-43566742scaffold7232:790996-1554276 in wrong orientation according to MGI1
14:43567166-43867839scaffold13621.1:209-300882 in wrong orientation according to MGI1
14:43867851-44156132scaffold2190:1366304-1654585 in wrong orientation according to WI_MRC-RH1
14:44175194-44903145scaffold2190:623777-1351728 in wrong orientation according to MGI1
14:49333048-49614595scaffold2803:658949-940496 in wrong orientation according to MGI1
14:52526158-52965648scaffold16232:574698-1014188 in wrong orientation according to MGI1
14:53920031-53998619scaffold41.0:1055796-1134384 in wrong orientation according to WI_MRC-RH1
14:54124637-54462637scaffold41.0:615568-940423 in wrong orientation according to MGI8
14:55281806-55732437scaffold8553.0:1-450632 in wrong orientation according to MGI1
14:58973470-58992907C1238231:1-19438 in wrong orientation according to WI_MRC-RH1
14:58992976-59060110scaffold912:1033100-1100234 in wrong orientation according to WI_MRC-RH1
14:62624625-63495543scaffold506.0:782854-1653772 in wrong orientation according to MGI1
14:64286845-65422922scaffold5107.0:1-1136078 in wrong orientation according to MGI1
14:68097478-68276845scaffold463:479993-659360 in wrong orientation according to WI_MRC-RH1
14:71524287-72191487scaffold96:1424964-2092164 in wrong orientation according to WI_MRC-RH1
14:72609153-73533778scaffold96:80938-1005563 in wrong orientation according to MGI1
14:75381026-75600532scaffold40298:294035-513541 in wrong orientation according to WI_MRC-RH1
14:75906044-76411526scaffold2465:1-505483 in wrong orientation according to WI_MRC-RH1
14:79547693-80209667scaffold61.1:50722-712696 in wrong orientation according to WI_MRC-RH1
14:80210487-80346588scaffold61.1:712697-848798 in wrong orientation according to WI_MRC-RH1
14:81683356-83377450scaffold1849:1-1694095 in wrong orientation according to MGI1
14:93540050-94006971scaffold1629.0:1111999-1578920 in wrong orientation according to WI_MRC-RH1
14:105534919-105730402scaffold11537.0:1-195484 in wrong orientation according to MGI1
14:108613994-109962735scaffold4037:1-1348742 in wrong orientation according to MGI1
14:129005925-129976095scaffold346.0:889258-1859428 in wrong orientation according to MGI1
14:129979698-130350205scaffold346.0:515413-885920 in wrong orientation according to WI_MRC-RH1

Chromosome: 15

RegionCommentComponents in FPC/Scaffold region
15:882686-1561818scaffold3722:1-679133 in wrong orientation according to WI_MRC-RH1
15:5636360-6250408scaffold8288:1-614049 in wrong orientation according to MGI1
15:8176654-9171689scaffold8741:1-995036 in wrong orientation according to MGI1
15:24656210-26182058scaffold7472.1:297817-1823665 in wrong orientation according to MGI1
15:27243695-28329004scaffold2079:1-1085310 in wrong orientation according to MGI1
15:31473030-31636954scaffold2664.1:1-163925 in wrong orientation according to MGI1
15:31748599-32130294scaffold20240:110848-492543 in wrong orientation according to WI_MRC-RH1
15:32187312-33108228scaffold5176:41076-961992 in wrong orientation according to MGI1
15:33289976-33518016scaffold7038.0:97305-321802 in wrong orientation according to MGI3
15:35962852-36031374scaffold3752:487076-555598 in wrong orientation according to WI_MRC-RH1
15:37353939-37535386scaffold6033:162437-343884 in wrong orientation according to WI_MRC-RH1
15:37535756-37698191scaffold6033:1-162436 in wrong orientation according to MGI1
15:39039386-39759594scaffold602:38353-758561 in wrong orientation according to MGI1
15:39761987-39800338scaffold602:1-38352 in wrong orientation according to MGI1
15:42600087-43570105scaffold2192.0:1051104-2021122 in wrong orientation according to MGI1
15:44920951-45517729scaffold4147.2:10567-607345 in wrong orientation according to MGI1
15:54252088-54802095scaffold3371:1-550008 in wrong orientation according to WI_MRC-RH1
15:62701339-63667262scaffold50:483670-1454070 in wrong orientation according to MGI2
15:63667653-63911136scaffold50:1454071-1697164 in wrong orientation according to MGI3
15:72302991-72702939scaffold902:1-399949 in wrong orientation according to MGI1
15:78888964-79146477scaffold3903:1-257514 in wrong orientation according to MGI1
15:79992541-80165282scaffold10148:7045-178476 in wrong orientation according to MGI3
15:81513390-81653794scaffold17734:1-140405 in wrong orientation according to WI_MRC-RH1
15:81768943-82606817scaffold397:103663-946388 in wrong orientation according to MGI2
15:82612892-82997418scaffold397:946389-1330915 in wrong orientation according to WI_MRC-RH1
15:83433626-84033847scaffold8109.1:265-600486 in wrong orientation according to WI_MRC-RH1
15:89344941-89754668scaffold168:199918-604765 in wrong orientation according to WI_MRC-RH3
15:94345185-96293958scaffold5362:1512511-3461284 in wrong orientation according to MGI1
15:96878013-97007010scaffold5362:812207-941204 in wrong orientation according to WI_MRC-RH1
15:97036989-97322734scaffold5362:494389-780134 in wrong orientation according to MGI1
15:97836335-98190651scaffold6262:1-354317 in wrong orientation according to MGI1
15:98196819-98755760scaffold2255:2267067-2826008 in wrong orientation according to MGI1
15:106075652-106609551scaffold9300.1:1-533900 in wrong orientation according to MGI1
15:107937626-107999092scaffold24363:1-61467 in wrong orientation according to MGI1
15:108000460-108213772scaffold281:4165937-4379041 in wrong orientation according to MGI3
15:108409730-108988889scaffold281:3401020-3980179 in wrong orientation according to MGI1
15:111109451-111313049scaffold281:1124180-1327778 in wrong orientation according to WI_MRC-RH1
15:112459160-113094878scaffold1626.3:1-635719 in wrong orientation according to MGI1

Chromosome: 16

RegionCommentComponents in FPC/Scaffold region
16:1346901-1466758scaffold1843.0:2022105-2141962 in wrong orientation according to WI_MRC-RH1
16:2630810-2927037scaffold1843.0:580611-876838 in wrong orientation according to MGI1
16:3101314-3498480scaffold1843.0:8614-405780 in wrong orientation according to MGI1
16:7462763-8277952scaffold4985:392662-1207851 in wrong orientation according to MGI1
16:11326968-11429042scaffold5379.1:406007-508081 in wrong orientation according to WI_MRC-RH1
16:11698758-12334958scaffold9429.2:269253-905453 in wrong orientation according to MGI1
16:13565526-13679414scaffold2808.1:1-113889 in wrong orientation according to WI_MRC-RH1
16:16906595-17285590scaffold18947:68671-447666 in wrong orientation according to MGI1
16:17494021-17672552scaffold5985:1-178532 in wrong orientation according to WI_MRC-RH1
16:18721918-18961578scaffold9648:1-239661 in wrong orientation according to MGI1
16:18975355-19105789scaffold788:469136-599570 in wrong orientation according to WI_MRC-RH1
16:31090444-31119061scaffold24397.2:1-28618 in wrong orientation according to MGI1
16:31163482-31222803scaffold24397.2:72062-131383 in wrong orientation according to WI_MRC-RH1
16:31817531-32036419scaffold1953.0:275926-493713 in wrong orientation according to MGI3
16:32385279-32642207scaffold64.1:3321699-3578627 in wrong orientation according to WI_MRC-RH1
16:33747945-35019933scaffold64.1:948482-2220470 in wrong orientation according to MGI1
16:35020676-35969156scaffold64.1:1-948481 in wrong orientation according to MGI1
16:37098568-37814526scaffold929.0:1-695555 in wrong orientation according to MGI6
16:38628537-39004790scaffold1577:806748-1183001 in wrong orientation according to WI_MRC-RH1
16:39005883-40772871scaffold6948.1:1-1766989 in wrong orientation according to MGI1
16:43511467-44241444scaffold5617.1:1861537-2591514 in wrong orientation according to MGI1
16:47907221-48399997scaffold11431:1-492777 in wrong orientation according to WI_MRC-RH1
16:49531735-49554031scaffold35464:1-22297 in wrong orientation according to MGI1
16:50341284-51138443scaffold2264.1:1-797160 in wrong orientation according to MGI1
16:61345963-61945583scaffold475:1-599621 in wrong orientation according to WI_MRC-RH1
16:64781167-64936948scaffold4923.0:1-155782 in wrong orientation according to MGI1
16:65296760-65516629scaffold2771.1:511776-731645 in wrong orientation according to MGI1
16:66614153-67332142scaffold18990:1-717990 in wrong orientation according to WI_MRC-RH1
16:68684817-69094440scaffold1626.4:1-409624 in wrong orientation according to WI_MRC-RH1
16:70155284-70589906scaffold4561:1-434623 in wrong orientation according to WI_MRC-RH1
16:71387166-71978041scaffold4870:138708-730482 in wrong orientation according to MGI2
16:78507990-78714324scaffold6620:1-206335 in wrong orientation according to MGI1
16:84151428-85083823scaffold446.0:922738-1855328 in wrong orientation according to MGI2
16:85093581-85271651scaffold446.0:1855329-2033399 in wrong orientation according to WI_MRC-RH1
16:87942725-88988819scaffold1817:522311-1568405 in wrong orientation according to MGI1
16:97156414-97433295scaffold5117:2644078-2924003 in wrong orientation according to WI_MRC-RH2
16:101454830-101899514scaffold790.2:1374370-1819054 in wrong orientation according to MGI1

Chromosome: 17

RegionCommentComponents in FPC/Scaffold region
17:203430-318216scaffold5518.2:852345-967131 in wrong orientation according to WI_MRC-RH1
17:1623334-3184170scaffold1848:542807-2103643 in wrong orientation according to MGI1
17:3408578-3629738scaffold1848:102977-324137 in wrong orientation according to MGI1
17:10594645-11419931scaffold2457.0:1-825287 in wrong orientation according to MGI1
17:13689377-13825814scaffold583:997818-1134255 in wrong orientation according to WI_MRC-RH1
17:24746512-25880955scaffold2453.0:577709-1718656 in wrong orientation according to MGI2
17:25883397-26244643scaffold2453.0:1718657-2079903 in wrong orientation according to MGI1
17:26283386-26310471scaffold2453.1:356-27441 in wrong orientation according to MGI1
17:28632766-29218102scaffold2466.0:423218-1008554 in wrong orientation according to MGI1
17:34095074-34457392scaffold9921:1155848-1518166 in wrong orientation according to WI_MRC-RH1
17:34462530-34942603scaffold9921:675774-1155847 in wrong orientation according to MGI1
17:34985215-35084347scaffold9921:559136-653404 in wrong orientation according to MGI3
17:35829985-35930511scaffold2557.0:1-100527 in wrong orientation according to WI_MRC-RH1
17:35953300-36316836scaffold2557.1:1-363537 in wrong orientation according to WI_MRC-RH1
17:37686895-37701174scaffold1033.0:1-14280 in wrong orientation according to MGI1
17:42641868-43124264scaffold2317:16539-498935 in wrong orientation according to MGI1
17:44920452-45246986scaffold7342.1:1-326535 in wrong orientation according to MGI1
17:53551654-53681831scaffold4937:368393-498570 in wrong orientation according to WI_MRC-RH1
17:56518311-56812286scaffold70.0:1-293976 in wrong orientation according to MGI1
17:60558185-60998358scaffold1879:847138-1287311 in wrong orientation according to WI_MRC-RH1
17:62180680-62401279scaffold1615.3:1-220600 in wrong orientation according to WI_MRC-RH1
17:62613654-63112476scaffold4172.1:2296909-2795731 in wrong orientation according to WI_MRC-RH1
17:63113658-64507307scaffold4172.1:903259-2296908 in wrong orientation according to MGI1
17:65462297-65892585scaffold291.1:1-430289 in wrong orientation according to WI_MRC-RH1
17:71362492-71559837scaffold16836:800392-997737 in wrong orientation according to WI_MRC-RH1
17:71593930-72240169scaffold16836:129535-775774 in wrong orientation according to MGI1
17:72372762-72695023scaffold13791:1-322262 in wrong orientation according to MGI1
17:72696655-72846998scaffold34060:1-150344 in wrong orientation according to MGI1
17:73174068-73618463scaffold8581.2:205866-650261 in wrong orientation according to MGI1
17:76462586-78013738scaffold4194.1:1-1551153 in wrong orientation according to MGI1
17:79021629-80331691scaffold6312.0:937829-2247891 in wrong orientation according to MGI1
17:90863830-91534065scaffold12422.1:419709-1089944 in wrong orientation according to MGI1
17:91561521-91882209scaffold1548:418396-739084 in wrong orientation according to MGI1
17:94480790-94923019scaffold8720.0:6758-448987 in wrong orientation according to WI_MRC-RH1

Chromosome: 18

RegionCommentComponents in FPC/Scaffold region
18:1-331115scaffold1872:118945-450059 in wrong orientation according to WI_MRC-RH1
18:956843-1471314scaffold10334:17554-532025 in wrong orientation according to WI_MRC-RH1
18:2019419-2223512scaffold7085.0:1-204094 in wrong orientation according to WI_MRC-RH1
18:3946989-4255233scaffold9999:1-308245 in wrong orientation according to WI_MRC-RH1
18:5637406-5825753scaffold2603.0:258023-446370 in wrong orientation according to WI_MRC-RH1
18:8195836-9064796scaffold407:642735-1511695 in wrong orientation according to MGI1
18:21606607-22272419scaffold8549:173567-839379 in wrong orientation according to WI_MRC-RH1
18:22451972-23408849scaffold500.1:1-956878 in wrong orientation according to MGI1
18:30095133-31194360scaffold716:1718269-2817496 in wrong orientation according to WI_MRC-RH1
18:33022543-33453851scaffold6170:31321-463639 in wrong orientation according to MGI2
18:34185324-34687196scaffold3247.3:1-501873 in wrong orientation according to MGI1
18:35160057-35581818scaffold7710:1-421762 in wrong orientation according to MGI1
18:35581830-35859061scaffold11739:169112-446343 in wrong orientation according to WI_MRC-RH1
18:37783002-38370603scaffold1478:183403-771004 in wrong orientation according to WI_MRC-RH1
18:44565701-44870619scaffold20515:381022-685940 in wrong orientation according to MGI1
18:48078892-48641110scaffold2310:570087-1132305 in wrong orientation according to MGI1
18:50998843-51917720scaffold2968.0:786111-1704988 in wrong orientation according to WI_MRC-RH1
18:51917732-52521662scaffold5587.1:1-603931 in wrong orientation according to WI_MRC-RH1
18:55447295-55681646scaffold3533.1:15416-249767 in wrong orientation according to MGI1
18:58741174-59617337scaffold2987:1366779-2244158 in wrong orientation according to MGI2
18:64175032-64652638scaffold35655:1-477607 in wrong orientation according to MGI1
18:66305109-66304143scaffold28394:1-369588 in wrong orientation according to MGI0
18:71721498-72897275scaffold500.0:1-1175778 in wrong orientation according to MGI1
18:79521004-80102433scaffold1935.3:1-581430 in wrong orientation according to WI_MRC-RH1
18:81736181-82003967scaffold2038:284173-551959 in wrong orientation according to WI_MRC-RH1
18:86032413-86405577scaffold7065:1-373165 in wrong orientation according to MGI1
18:86405665-86870269scaffold11941:894956-1359560 in wrong orientation according to WI_MRC-RH1
18:86870541-87765495scaffold11941:1-894955 in wrong orientation according to MGI1
18:89560559-90232035scaffold14827:1-671477 in wrong orientation according to MGI1
18:90234093-91117430scaffold25698:1-883338 in wrong orientation according to MGI1
18:97600001-97740765scaffold3648.0:1-140765 in wrong orientation according to WI_MRC-RH1

Chromosome: 19

RegionCommentComponents in FPC/Scaffold region
19:962347-1067631scaffold414.2:1007490-1112774 in wrong orientation according to WI_MRC-RH1
19:1068585-1537596scaffold414.2:538478-1007489 in wrong orientation according to WI_MRC-RH1
19:1776652-2093797scaffold414.2:1-317146 in wrong orientation according to WI_MRC-RH1
19:2094135-2139947C1294491:3225-49037 in wrong orientation according to WI_MRC-RH1
19:6079403-6425289scaffold1003:180773-526659 in wrong orientation according to MGI1
19:6430073-6521688scaffold1003:526660-618275 in wrong orientation according to WI_MRC-RH1
19:7477574-8861831scaffold3245:1-1384258 in wrong orientation according to MGI1
19:9329942-9385068scaffold10312:370204-425330 in wrong orientation according to WI_MRC-RH1
19:12995170-13389360scaffold1936.1:870173-1264363 in wrong orientation according to MGI1
19:14987983-15155520scaffold2414.1:211132-383896 in wrong orientation according to WI_MRC-RH2
19:19651194-20008880scaffold320:136821-494507 in wrong orientation according to MGI1
19:20009753-20143906scaffold320:1-134154 in wrong orientation according to WI_MRC-RH1
19:20798665-21270442scaffold3784.3:10148-481925 in wrong orientation according to WI_MRC-RH1
19:24216294-24629338scaffold29689.0:1-413045 in wrong orientation according to WI_MRC-RH1
19:28256008-29502165scaffold1027.0:1-1247313 in wrong orientation according to MGI2
19:30768045-30976322scaffold1707.1:2894-211171 in wrong orientation according to WI_MRC-RH1
19:32456573-33143783scaffold1707.0:525420-1212630 in wrong orientation according to WI_MRC-RH1
19:33665330-34034799scaffold6408:1-369470 in wrong orientation according to MGI1
19:35369902-35787084scaffold919:147219-564401 in wrong orientation according to MGI1
19:36848395-37488128scaffold1941.3:1385544-2025277 in wrong orientation according to MGI1
19:37489374-38068829scaffold1941.3:806088-1385543 in wrong orientation according to MGI1
19:38069233-38676554scaffold1941.3:198766-806087 in wrong orientation according to WI_MRC-RH1
19:38881877-40196098scaffold949:1-1314222 in wrong orientation according to MGI1
19:42845818-44169098scaffold3069:507798-1828226 in wrong orientation according to MGI3
19:44169328-44575848scaffold3069:1828227-2234747 in wrong orientation according to WI_MRC-RH1
19:44605895-45686832scaffold927.0:1-1080938 in wrong orientation according to MGI1
19:47347688-48708899scaffold1764:83704-1444915 in wrong orientation according to MGI1
19:49203560-49604526scaffold289.0:1-400967 in wrong orientation according to MGI1
19:49605084-50570017scaffold289.0:400968-1365901 in wrong orientation according to MGI1
19:50570588-51385361scaffold11057:1-814774 in wrong orientation according to MGI1
19:59418144-61138201scaffold234.1:2229822-3949879 in wrong orientation according to MGI1
19:62729420-63403341scaffold234.1:1-673922 in wrong orientation according to WI_MRC-RH1

Chromosome: 2

RegionCommentComponents in FPC/Scaffold region
2:9761032-9912795scaffold3613.0:761750-913513 in wrong orientation according to WI_MRC-RH1
2:9927689-10781627scaffold3613.0:913514-1767452 in wrong orientation according to MGI1
2:10830653-11296470scaffold2346.2:103483-569300 in wrong orientation according to WI_MRC-RH1
2:15312979-15526770scaffold8369:1-213792 in wrong orientation according to WI_MRC-RH1
2:19482284-19695511scaffold6450:1450266-1663493 in wrong orientation according to MGI1
2:19934678-20120643scaffold8392.0:1-185966 in wrong orientation according to MGI1
2:20286803-20508445scaffold291.0:1-221643 in wrong orientation according to WI_MRC-RH1
2:22070533-22411906scaffold7367:1-341374 in wrong orientation according to MGI1
2:26529555-27138207scaffold503.0:110403-736365 in wrong orientation according to MGI2
2:27377190-27895765scaffold5956.0:461819-980394 in wrong orientation according to WI_MRC-RH1
2:30316641-31053962scaffold3884.1:1040304-1777625 in wrong orientation according to MGI1
2:31054441-31731395scaffold3884.1:363349-1040303 in wrong orientation according to MGI1
2:32569221-32814192scaffold14892:1-244972 in wrong orientation according to WI_MRC-RH1
2:35487519-35709738scaffold2452.0:138744-360963 in wrong orientation according to MGI1
2:36053009-36989462scaffold3400:189782-1125102 in wrong orientation according to MGI3
2:37001018-37252855scaffold3400:1125103-1376940 in wrong orientation according to MGI1
2:42957736-43252491scaffold5692:1-294756 in wrong orientation according to MGI1
2:47440615-47685787scaffold8775.1:508750-753922 in wrong orientation according to MGI1
2:48239897-48802438scaffold4729:1012760-1575301 in wrong orientation according to MGI1
2:50980821-51736168scaffold3395.2:1-755348 in wrong orientation according to MGI1
2:51822765-52695559scaffold26452:84620-957414 in wrong orientation according to MGI1
2:53539246-56609115scaffold2030.4:1-3069870 in wrong orientation according to MGI1
2:59028331-59077535scaffold28644.1:136084-185288 in wrong orientation according to MGI1
2:60449903-61051487scaffold391.2:363392-964976 in wrong orientation according to MGI1
2:63188298-64939208scaffold613:1-1750911 in wrong orientation according to MGI1
2:64939220-65751090scaffold9143.0:1-811871 in wrong orientation according to MGI1
2:73838672-74013389scaffold3634:246041-420758 in wrong orientation according to MGI1
2:75994723-76214589scaffold1267.1:1720353-1940219 in wrong orientation according to WI_MRC-RH1
2:76220479-76646070scaffold1267.1:1940265-2365856 in wrong orientation according to MGI1
2:76682547-76998724scaffold234.0:1-316178 in wrong orientation according to MGI1
2:82459626-82961141scaffold10384:136053-637568 in wrong orientation according to MGI1
2:85517191-86054462scaffold5675:1-537272 in wrong orientation according to MGI1
2:86451173-86655735scaffold724.1:59136-263698 in wrong orientation according to WI_MRC-RH1
2:90434085-90766553scaffold12520:1-332469 in wrong orientation according to MGI1
2:99578447-99859167scaffold16865.0:1-280721 in wrong orientation according to WI_MRC-RH1
2:99859747-100430719scaffold19410:709884-1280856 in wrong orientation according to MGI1
2:105354816-106137955scaffold9:751196-1534335 in wrong orientation according to WI_MRC-RH1
2:113396852-114398103scaffold685.1:1-1034730 in wrong orientation according to MGI2
2:120494902-120839482scaffold12334:1-344581 in wrong orientation according to WI_MRC-RH1
2:122746232-124273415scaffold2653:498567-2025750 in wrong orientation according to MGI1
2:124274219-124609016scaffold2653:163769-498566 in wrong orientation according to WI_MRC-RH1
2:124610626-124774362scaffold2653:1-163737 in wrong orientation according to WI_MRC-RH1
2:127718025-128432264scaffold4116.0:383454-1097693 in wrong orientation according to MGI1
2:128445112-129340962scaffold8781.1:232-896082 in wrong orientation according to MGI1
2:131138727-131909443scaffold3139.1:675582-1446298 in wrong orientation according to MGI1
2:132594114-132861032scaffold9589.0:1-266919 in wrong orientation according to MGI1
2:135171000-135898550scaffold1338.0:1-729127 in wrong orientation according to MGI2
2:136676860-137152262scaffold122:1546681-2022083 in wrong orientation according to MGI1
2:137153175-138008650scaffold122:691205-1546680 in wrong orientation according to MGI1
2:138008880-138700083scaffold122:1-691204 in wrong orientation according to WI_MRC-RH1
2:139540960-140103260scaffold3139.0:1-562301 in wrong orientation according to WI_MRC-RH1
2:140104285-140781117scaffold637.2:1-679850 in wrong orientation according to WI_MRC-RH2
2:141355318-141642586scaffold20946:1-287269 in wrong orientation according to WI_MRC-RH1
2:141746160-142051785scaffold4800:555258-860883 in wrong orientation according to MGI1
2:142052199-142595838scaffold4800:11618-555257 in wrong orientation according to WI_MRC-RH1
2:142611980-142923508scaffold2002.0:1-313846 in wrong orientation according to WI_MRC-RH2
2:142924094-143486427scaffold2872.1:1-562334 in wrong orientation according to MGI1
2:146130714-146518576scaffold16498:391668-779530 in wrong orientation according to MGI1
2:146908284-147858719scaffold5011:1-950436 in wrong orientation according to MGI1
2:147892359-149043808scaffold1348.1:457203-1616059 in wrong orientation according to MGI2
2:154003885-155353355scaffold3129:752926-2101615 in wrong orientation according to MGI3
2:155456710-155924921scaffold2867:1-468212 in wrong orientation according to MGI1
2:159184781-159758333scaffold2937.0:1-573553 in wrong orientation according to MGI1
2:160117427-160440733scaffold610:351625-674931 in wrong orientation according to MGI1
2:160453557-161263577scaffold610:674932-1484952 in wrong orientation according to WI_MRC-RH1
2:161275740-163657859scaffold610:1495437-3877556 in wrong orientation according to MGI1
2:163659880-164278678scaffold610:3877557-4496355 in wrong orientation according to MGI1
2:167281558-167462393scaffold8630:857330-1038165 in wrong orientation according to WI_MRC-RH1
2:171990308-172409089scaffold3816:993359-1409238 in wrong orientation according to MGI3
2:173087761-173396754scaffold7283:1-308994 in wrong orientation according to WI_MRC-RH1
2:175263929-175712983scaffold14483.2:1-449055 in wrong orientation according to MGI1
2:176858974-177239057scaffold6222.1:2840609-3220692 in wrong orientation according to MGI1
2:177481148-178284132scaffold6222.1:1824546-2627530 in wrong orientation according to MGI1
2:179180180-180116216scaffold6222.1:1-936037 in wrong orientation according to MGI1
2:180116514-180334237scaffold5698.0:1-217724 in wrong orientation according to MGI1
2:181559634-182408789scaffold277.1:625041-1474196 in wrong orientation according to MGI1
2:182409733-182936667scaffold277.1:98106-625040 in wrong orientation according to MGI1
2:192335236-192833236scaffold8814.0:1-498001 in wrong orientation according to MGI1
2:193129115-193479761scaffold1068.0:279860-630506 in wrong orientation according to MGI1
2:199056148-199537481scaffold2369:1-481334 in wrong orientation according to MGI1
2:199537725-199578817C1289549:1-41093 in wrong orientation according to WI_MRC-RH1
2:199579167-199976987scaffold7142.1:1-397821 in wrong orientation according to WI_MRC-RH1
2:199976999-200217055scaffold4614:896640-1136696 in wrong orientation according to MGI1
2:200217768-201008364scaffold4614:105999-896595 in wrong orientation according to MGI1

Chromosome: 3

RegionCommentComponents in FPC/Scaffold region
3:1971055-2742702scaffold3571.1:138497-910144 in wrong orientation according to MGI1
3:5754452-6031917scaffold11166.1:1-286157 in wrong orientation according to WI_MRC-RH2
3:6032183-6316560scaffold6592:1315873-1600250 in wrong orientation according to WI_MRC-RH1
3:16515272-16657616scaffold1918.2:1457405-1599749 in wrong orientation according to WI_MRC-RH1
3:17991405-18589069scaffold5733:1-597665 in wrong orientation according to MGI1
3:20685960-21203835scaffold5232.0:1-517876 in wrong orientation according to WI_MRC-RH1
3:22302762-22495399scaffold117.0:1-192638 in wrong orientation according to WI_MRC-RH1
3:30478859-30602707scaffold13864:117659-241507 in wrong orientation according to WI_MRC-RH1
3:32894558-33575731scaffold3288:1-681174 in wrong orientation according to MGI1
3:52752248-53245121scaffold5640:1-492874 in wrong orientation according to MGI1
3:76016250-76556208scaffold1499.1:1-539959 in wrong orientation according to MGI1
3:84439429-85141685scaffold374:2267054-2969310 in wrong orientation according to WI_MRC-RH1
3:85787760-87336820scaffold374:73505-1622565 in wrong orientation according to MGI1
3:89319633-90749297scaffold2966:216419-1646083 in wrong orientation according to MGI1
3:90750337-90962896scaffold2966:1-212560 in wrong orientation according to MGI1
3:93710239-94738308scaffold3251.1:203394-1230855 in wrong orientation according to MGI3
3:94738999-94942391scaffold3251.1:1-203393 in wrong orientation according to MGI1
3:94963650-95214925scaffold10694:1-251276 in wrong orientation according to WI_MRC-RH1
3:95375910-95448048scaffold915:2977-75115 in wrong orientation according to WI_MRC-RH1
3:97443090-97705081scaffold20698:126359-388350 in wrong orientation according to MGI1
3:100343807-100485193scaffold3999.1:1-141387 in wrong orientation according to WI_MRC-RH1
3:102374499-102375942C885947:1-1444 in wrong orientation according to WI_MRC-RH1
3:102533752-103259048scaffold2217.1:1-708213 in wrong orientation according to MGI15
3:103444733-104321541scaffold179:84833-961197 in wrong orientation according to MGI3
3:104566260-104963914scaffold15424:1-397655 in wrong orientation according to WI_MRC-RH1
3:104964909-105049835scaffold15424:397656-482582 in wrong orientation according to WI_MRC-RH1
3:106180427-106612210scaffold9736.1:1-431784 in wrong orientation according to MGI1
3:108918131-109889541scaffold1252.0:1267936-2239346 in wrong orientation according to MGI1
3:111693947-112235609scaffold3225.1:238307-779969 in wrong orientation according to WI_MRC-RH1
3:112625988-112927758scaffold32456:1-301771 in wrong orientation according to WI_MRC-RH1
3:112928180-113539069scaffold1615.2:1-610890 in wrong orientation according to WI_MRC-RH1
3:113779155-114886826scaffold5637:20754-1128425 in wrong orientation according to WI_MRC-RH1
3:114891041-115208229scaffold5637:1128426-1445614 in wrong orientation according to WI_MRC-RH1
3:115547885-115888851scaffold933:1-340967 in wrong orientation according to WI_MRC-RH1
3:116117643-117486485scaffold3103.3:1-1368843 in wrong orientation according to MGI1
3:117512806-118146687scaffold650:23897-657778 in wrong orientation according to MGI1
3:126283984-126298036C1198939:1-14053 in wrong orientation according to WI_MRC-RH1
3:126298050-127678677scaffold157.0:1-1380628 in wrong orientation according to MGI1
3:131941446-132147034scaffold2087.1:1-205589 in wrong orientation according to WI_MRC-RH1
3:132147420-132313878scaffold9592:502746-669204 in wrong orientation according to WI_MRC-RH1
3:133416302-134631773scaffold7108:1-1215472 in wrong orientation according to MGI1
3:134685411-135665043scaffold3269:148240-1127872 in wrong orientation according to MGI1
3:137200096-137808436scaffold138:1-608341 in wrong orientation according to WI_MRC-RH1
3:137815822-138465160scaffold15879:1-649339 in wrong orientation according to WI_MRC-RH1
3:138465172-138698361scaffold3450.0:1-233190 in wrong orientation according to WI_MRC-RH1
3:140505786-140975068scaffold1694.1:1-469283 in wrong orientation according to MGI1
3:145323537-146014765scaffold3174:1-694664 in wrong orientation according to WI_MRC-RH2
3:147481005-148090512scaffold15194:93420-702927 in wrong orientation according to WI_MRC-RH1
3:149506808-150121654scaffold2425.0:184024-798870 in wrong orientation according to MGI1
3:154789374-154990748scaffold22378.1:1-201375 in wrong orientation according to MGI1
3:158723440-158860822scaffold13034:1-137383 in wrong orientation according to WI_MRC-RH1
3:173167354-173898911scaffold370:365906-1097463 in wrong orientation according to WI_MRC-RH1

Chromosome: 4

RegionCommentComponents in FPC/Scaffold region
4:262063-302850scaffold8619:1-40788 in wrong orientation according to WI_MRC-RH1
4:344305-1041539scaffold5942.0:1-697235 in wrong orientation according to WI_MRC-RH1
4:4845217-5386073scaffold1926:1-540857 in wrong orientation according to MGI1
4:5768109-6540665scaffold10614:1-772557 in wrong orientation according to MGI1
4:8091748-8270767scaffold225.2:9923-188942 in wrong orientation according to WI_MRC-RH1
4:10514471-11413907scaffold2627:91837-991273 in wrong orientation according to MGI1
4:17964812-18438338scaffold4317:1020265-1500216 in wrong orientation according to WI_MRC-RH2
4:18450485-19421528scaffold4317:41887-1012930 in wrong orientation according to MGI1
4:24273223-24576625scaffold2176:404343-707745 in wrong orientation according to MGI1
4:32220115-32457820scaffold11316.1:1-237706 in wrong orientation according to MGI1
4:32724438-33299546scaffold16201:7570-582678 in wrong orientation according to MGI1
4:34385308-35173919scaffold10189.1:1-788612 in wrong orientation according to MGI1
4:39770270-40441777scaffold2045.2:125424-796931 in wrong orientation according to WI_MRC-RH1
4:43924341-44224362scaffold1168:43503-343524 in wrong orientation according to WI_MRC-RH1
4:44268300-44737329scaffold4883.1:1-469030 in wrong orientation according to WI_MRC-RH1
4:44745067-45034877scaffold4883.1:469031-759434 in wrong orientation according to WI_MRC-RH2
4:48702955-49294921scaffold549:408437-1000403 in wrong orientation according to MGI1
4:50027268-51108609scaffold612.0:1-1081342 in wrong orientation according to MGI1
4:51376489-52339019scaffold2568.0:60700-1025160 in wrong orientation according to MGI4
4:60702665-60874712scaffold6407.0:1-172048 in wrong orientation according to WI_MRC-RH1
4:61588388-62126205scaffold1412.0:327333-865150 in wrong orientation according to WI_MRC-RH1
4:65671101-65828630scaffold44909:57968-239059 in wrong orientation according to WI_MRC-RH2
4:67023223-67717725scaffold2292.0:1-694503 in wrong orientation according to WI_MRC-RH1
4:68688192-69205217scaffold1537.0:1-517026 in wrong orientation according to MGI1
4:70427428-70854955scaffold6038:1-427528 in wrong orientation according to WI_MRC-RH1
4:70855759-70980761scaffold4896.1:1-125003 in wrong orientation according to MGI1
4:72897751-73772473scaffold4292.0:289455-1168441 in wrong orientation according to WI_MRC-RH2
4:88274963-88404368scaffold7404:1-129406 in wrong orientation according to MGI1
4:88973739-89726560scaffold16934:1-752822 in wrong orientation according to MGI1
4:90921140-91446536scaffold1105.1:1005891-1531287 in wrong orientation according to WI_MRC-RH1
4:91517837-92452361scaffold1105.1:462-934021 in wrong orientation according to MGI3
4:97407075-98214080scaffold900.1:1090600-1897605 in wrong orientation according to MGI1
4:108258543-108503038scaffold4133.0:637602-882097 in wrong orientation according to WI_MRC-RH1
4:114441290-115146345scaffold2318.0:675029-1380084 in wrong orientation according to WI_MRC-RH1
4:115590371-116012822scaffold5705:1-422452 in wrong orientation according to WI_MRC-RH1
4:116015342-116320624scaffold8663:1713173-2018455 in wrong orientation according to WI_MRC-RH1
4:116753391-118058284scaffold8663:1-1304894 in wrong orientation according to MGI1
4:120441152-120647447scaffold466:1206076-1412371 in wrong orientation according to WI_MRC-RH1
4:122942601-123520983scaffold15167:104-578486 in wrong orientation according to MGI1
4:126093042-126651430scaffold3818.1:242789-801177 in wrong orientation according to MGI1
4:126661538-126904325scaffold3818.1:1-242788 in wrong orientation according to MGI1
4:128822631-129651553scaffold5425:171664-1000586 in wrong orientation according to MGI1
4:129653580-129889761scaffold5425:1000587-1236768 in wrong orientation according to WI_MRC-RH1
4:129890984-130495042scaffold5425:1236769-1840827 in wrong orientation according to MGI1
4:131917579-132557417scaffold4189:1-639839 in wrong orientation according to MGI1
4:132823612-132864672scaffold24453:305231-346291 in wrong orientation according to MGI1
4:133501880-134376539scaffold24856:68272-942931 in wrong orientation according to MGI1
4:135930361-136132819scaffold26367:695650-898108 in wrong orientation according to WI_MRC-RH1
4:139885824-139912554C1267095:1-26731 in wrong orientation according to WI_MRC-RH1
4:141519213-142379111scaffold1746:1-859899 in wrong orientation according to WI_MRC-RH1
4:142380204-143122309scaffold1746:859900-1602005 in wrong orientation according to MGI1
4:143434146-143555611scaffold3602:1-121466 in wrong orientation according to WI_MRC-RH1
4:143588140-144689648scaffold14112:1-1101509 in wrong orientation according to MGI1
4:144823289-145168474scaffold9583.1:1-353423 in wrong orientation according to MGI2
4:146507157-147115609scaffold774:702852-1311304 in wrong orientation according to MGI1
4:147216834-147821370scaffold774:1-604537 in wrong orientation according to MGI1
4:149089704-149628195scaffold1112.1:904447-1429333 in wrong orientation according to WI_MRC-RH4
4:150553830-151840802scaffold2166:1-1286973 in wrong orientation according to MGI1
4:152404295-154123319scaffold6853:1-1719025 in wrong orientation according to MGI1
4:161533178-161612697scaffold2981:652713-732232 in wrong orientation according to MGI1
4:161613122-162265833scaffold2981:1-652712 in wrong orientation according to MGI1
4:162265845-162535687scaffold8920:1-269843 in wrong orientation according to WI_MRC-RH1
4:162536234-163590683scaffold8920:269844-1324293 in wrong orientation according to MGI1
4:171029040-171211553scaffold1626.0:193930-376443 in wrong orientation according to WI_MRC-RH1

Chromosome: 5

RegionCommentComponents in FPC/Scaffold region
5:405954-610375scaffold1484:1-204422 in wrong orientation according to WI_MRC-RH1
5:929652-1150490scaffold8272:1-219864 in wrong orientation according to WI_MRC-RH3
5:2805945-3068411scaffold1903.0:122220-408000 in wrong orientation according to WI_MRC-RH2
5:16278448-16940978scaffold1864:1-662531 in wrong orientation according to MGI1
5:18304287-18699439scaffold7783.1:1-395153 in wrong orientation according to MGI1
5:19467324-20488061scaffold11831.3:1-1020738 in wrong orientation according to MGI1
5:20496701-20563285scaffold11253:1-66585 in wrong orientation according to MGI1
5:20756536-20995596scaffold8814.1:1-239061 in wrong orientation according to WI_MRC-RH1
5:24196075-25071439scaffold1752:406743-1282107 in wrong orientation according to MGI1
5:29194642-29533200scaffold9599:144703-483261 in wrong orientation according to WI_MRC-RH1
5:34866104-35507314scaffold4162.3:356-641566 in wrong orientation according to WI_MRC-RH1
5:35677146-37004322scaffold418.0:1-1327177 in wrong orientation according to MGI1
5:45497087-46319863scaffold1062:208928-1031704 in wrong orientation according to MGI1
5:47453998-48235543scaffold947.0:516248-1297793 in wrong orientation according to MGI1
5:53625462-54777683scaffold7173:1-1152222 in wrong orientation according to WI_MRC-RH1
5:56618201-56724793scaffold2607:1-106593 in wrong orientation according to WI_MRC-RH1
5:61222089-61381518scaffold5156.0:245955-405384 in wrong orientation according to WI_MRC-RH1
5:68588543-68923972scaffold2058:961020-1296449 in wrong orientation according to WI_MRC-RH1
5:70254786-70747391scaffold1524.0:167404-666079 in wrong orientation according to MGI2
5:70937685-71433617scaffold3956:1-495933 in wrong orientation according to WI_MRC-RH1
5:79278103-81331844scaffold7642.0:1-2054784 in wrong orientation according to MGI2
5:81963629-81980957C1225647:1-17329 in wrong orientation according to WI_MRC-RH1
5:82721893-82911833scaffold2104.1:1-189941 in wrong orientation according to WI_MRC-RH1
5:82936667-83101077scaffold1281.2:453784-618194 in wrong orientation according to WI_MRC-RH1
5:83101759-83465600scaffold1281.2:89942-453783 in wrong orientation according to MGI1
5:94468620-94633947scaffold7844:1-166512 in wrong orientation according to WI_MRC-RH2
5:94958854-95131463scaffold4279.1:60908-233517 in wrong orientation according to WI_MRC-RH1
5:96408297-97363574scaffold580:1073030-2028307 in wrong orientation according to MGI1
5:98225858-98531434scaffold3784.2:157403-462979 in wrong orientation according to WI_MRC-RH1
5:99041643-100490632scaffold3784.2:955691-2414602 in wrong orientation according to MGI2
5:106274527-106799750scaffold7882:970988-1496211 in wrong orientation according to WI_MRC-RH1
5:114099657-114479792scaffold3006.0:26280-406415 in wrong orientation according to MGI1
5:117157820-117717330scaffold3767.1:944673-1504183 in wrong orientation according to WI_MRC-RH1
5:123228412-124553352scaffold247:1943208-3268148 in wrong orientation according to MGI1
5:124684231-125114248scaffold6452.1:325-430342 in wrong orientation according to WI_MRC-RH1
5:125577438-125667532scaffold1804.0:1-90095 in wrong orientation according to WI_MRC-RH1
5:126420872-126782533scaffold5899:719047-1080708 in wrong orientation according to WI_MRC-RH1
5:126838079-127109925scaffold5899:1117458-1389304 in wrong orientation according to MGI1
5:127200747-127651517scaffold5899:1461362-1912132 in wrong orientation according to MGI1
5:127651777-127775983scaffold5899:1916165-2040371 in wrong orientation according to WI_MRC-RH1
5:129264291-129870878scaffold595.1:1060223-1666810 in wrong orientation according to WI_MRC-RH1
5:135901917-135990667scaffold41173.0:1-92348 in wrong orientation according to MGI2
5:135996984-136206202scaffold425:1-209219 in wrong orientation according to WI_MRC-RH1
5:149210775-149537318scaffold1356:448988-1520924 in wrong orientation according to MGI2
5:149594630-150742949scaffold1356:1-1155385 in wrong orientation according to MGI2
5:154082121-154236943scaffold6339:1-154823 in wrong orientation according to WI_MRC-RH1
5:156609196-156883720scaffold7182.1:1-274525 in wrong orientation according to WI_MRC-RH1
5:160960175-161327440scaffold23350.0:1-367266 in wrong orientation according to MGI1
5:161327452-162293283scaffold308:382272-1355740 in wrong orientation according to MGI4
5:164264891-164417555scaffold868.1:238233-390897 in wrong orientation according to WI_MRC-RH1
5:165052489-166828685scaffold782.1:176-1779156 in wrong orientation according to MGI2
5:168439138-169477102scaffold2020:422928-1460892 in wrong orientation according to MGI1
5:169478005-169891965scaffold2020:1-420717 in wrong orientation according to MGI2

Chromosome: 6

RegionCommentComponents in FPC/Scaffold region
6:176554-433340scaffold1543:1-256787 in wrong orientation according to WI_MRC-RH1
6:5313824-5617074scaffold2389:431302-734552 in wrong orientation according to WI_MRC-RH1
6:13038958-13213998scaffold5619:220257-395297 in wrong orientation according to MGI1
6:15161006-15406638scaffold686.0:41656-287288 in wrong orientation according to MGI1
6:20183924-20870781scaffold2093:1007340-1694197 in wrong orientation according to WI_MRC-RH1
6:22980933-23330459scaffold2205:118432-467958 in wrong orientation according to WI_MRC-RH1
6:24768939-25029696scaffold10005:1-260758 in wrong orientation according to WI_MRC-RH1
6:29460099-29962572scaffold1636.1:229156-731629 in wrong orientation according to MGI1
6:31622484-32040327scaffold9679.0:1-417844 in wrong orientation according to MGI1
6:32044722-32679016scaffold2569.1:1-634295 in wrong orientation according to MGI1
6:34056089-35034248scaffold1354.0:848229-1826388 in wrong orientation according to MGI1
6:38679746-39290735scaffold1273:1-610990 in wrong orientation according to MGI1
6:39340744-41411191scaffold2753.0:587518-2657965 in wrong orientation according to MGI1
6:42093932-42439712scaffold2430:1-345781 in wrong orientation according to MGI1
6:49098088-49550025scaffold3651:170384-622321 in wrong orientation according to MGI1
6:54748051-55467466scaffold2522:1-719416 in wrong orientation according to MGI1
6:62029203-62497040scaffold19583.1:24015-491852 in wrong orientation according to WI_MRC-RH1
6:63690479-64053140scaffold8529.0:75984-438645 in wrong orientation according to MGI1
6:64690357-65327092scaffold61.0:385311-1020652 in wrong orientation according to MGI3
6:71658409-71796560scaffold42398:1-138152 in wrong orientation according to WI_MRC-RH1
6:76695197-77274777scaffold1573.1:1523520-2104121 in wrong orientation according to MGI2
6:77569365-78806507scaffold1573.1:1-1237143 in wrong orientation according to MGI1
6:89783608-90300937scaffold3575:1160346-1677675 in wrong orientation according to MGI1
6:90355550-91457167scaffold3575:9368-1110985 in wrong orientation according to MGI1
6:92477228-92694363scaffold37942:1-217136 in wrong orientation according to WI_MRC-RH1
6:93116914-94390685scaffold3863:1-1272022 in wrong orientation according to MGI3
6:95318386-95782266scaffold226.1:303428-767308 in wrong orientation according to MGI1
6:98419115-98980605scaffold469.1:1304112-1865602 in wrong orientation according to WI_MRC-RH1
6:101895513-102394513scaffold689.1:1178902-1677902 in wrong orientation according to MGI1
6:105350042-105831737scaffold6402.0:1-481696 in wrong orientation according to MGI1
6:109600096-110949677scaffold2191.1:542971-1892552 in wrong orientation according to MGI1
6:115770777-116132136scaffold2244.1:440329-801688 in wrong orientation according to MGI1
6:117481421-118703256scaffold86:1-1227812 in wrong orientation according to MGI2
6:121092794-121980165scaffold1677:574640-1462011 in wrong orientation according to MGI1
6:122857928-123732287scaffold2748.1:1-874360 in wrong orientation according to MGI1
6:123732665-124431854scaffold2748.1:874361-1573550 in wrong orientation according to MGI1
6:124486173-124661269scaffold5258.1:118-175214 in wrong orientation according to MGI1
6:128635444-131464222scaffold114.1:189281-3018059 in wrong orientation according to MGI1
6:131476402-131683628scaffold114.1:3022739-3229965 in wrong orientation according to WI_MRC-RH1
6:131683746-132043092scaffold1763:322127-681473 in wrong orientation according to MGI1
6:132090804-132376267scaffold1763:1-284968 in wrong orientation according to MGI3
6:134260391-134374030scaffold4600:204936-318575 in wrong orientation according to WI_MRC-RH1
6:138274826-140443473scaffold1586.0:554311-2722958 in wrong orientation according to MGI1
6:140559638-140706557scaffold1586.0:312036-464940 in wrong orientation according to WI_MRC-RH2
6:140766730-140949445scaffold1586.0:72181-254896 in wrong orientation according to MGI1
6:143805545-144115417scaffold9516:1-291386 in wrong orientation according to MGI6
6:144122906-144369609scaffold4479:82827-329530 in wrong orientation according to WI_MRC-RH1
6:147143508-147655821scaffold6494.3:29749-542062 in wrong orientation according to MGI1
6:155614730-156141405scaffold177.0:1-526676 in wrong orientation according to WI_MRC-RH1
6:158296995-159224921scaffold1365:1-927927 in wrong orientation according to MGI1
6:161617856-161796036scaffold3103.1:284584-464844 in wrong orientation according to MGI2
6:163383198-163454757scaffold3661.0:1-71560 in wrong orientation according to WI_MRC-RH1

Chromosome: 7

RegionCommentComponents in FPC/Scaffold region
7:1-230340scaffold5567:1-230340 in wrong orientation according to WI_MRC-RH1
7:257846-445359scaffold4558.0:422247-609760 in wrong orientation according to MGI1
7:15188168-15627759scaffold223:554932-994523 in wrong orientation according to MGI1
7:15731831-16188638scaffold12851:1-456808 in wrong orientation according to MGI1
7:24319177-24408178scaffold2084:1204770-1293771 in wrong orientation according to WI_MRC-RH1
7:25765715-25876185scaffold16663.1:13169-121726 in wrong orientation according to MGI3
7:29893732-30330510scaffold3607:744764-1181542 in wrong orientation according to WI_MRC-RH1
7:37258022-37924528scaffold4593:3053558-3720064 in wrong orientation according to MGI1
7:37924901-39306322scaffold4593:1669959-3051380 in wrong orientation according to MGI1
7:49047760-49137329scaffold607:1-89570 in wrong orientation according to WI_MRC-RH1
7:49137341-49573900scaffold265.0:1-450737 in wrong orientation according to MGI5
7:50024024-50183899scaffold265.0:891615-1051490 in wrong orientation according to WI_MRC-RH1
7:54241573-54843321scaffold3636:1-601749 in wrong orientation according to WI_MRC-RH1
7:56343056-56588746scaffold27891:126819-372509 in wrong orientation according to MGI1
7:61208024-61546646scaffold1626.2:624253-962875 in wrong orientation according to WI_MRC-RH1
7:61549692-61858266scaffold1626.2:312688-621262 in wrong orientation according to MGI1
7:69288213-70588122scaffold3275.1:53040-1352949 in wrong orientation according to MGI1
7:70671162-70992812scaffold35731:1-321651 in wrong orientation according to MGI1
7:70992824-71430650scaffold2602:2263589-2701415 in wrong orientation according to MGI1
7:72050797-73706780scaffold2602:1-1655984 in wrong orientation according to MGI1
7:79808528-80915920scaffold3499.0:213734-1321126 in wrong orientation according to WI_MRC-RH1
7:82973502-83160027scaffold114.2:1-186526 in wrong orientation according to WI_MRC-RH1
7:83301519-83477576scaffold4271:51785-227842 in wrong orientation according to WI_MRC-RH1
7:89656631-89893757scaffold863:1941326-2178452 in wrong orientation according to WI_MRC-RH1
7:90867372-91680474scaffold863:157149-970251 in wrong orientation according to MGI1
7:97023432-97354844scaffold5709.2:1-331413 in wrong orientation according to WI_MRC-RH1
7:102299503-102510360scaffold3272.0:1-210858 in wrong orientation according to MGI1
7:107592586-108700214scaffold1371.0:1685204-2792832 in wrong orientation according to MGI1
7:110136394-110390493scaffold1371.0:1-254100 in wrong orientation according to MGI1
7:112578668-112980993scaffold7738.1:1-402326 in wrong orientation according to WI_MRC-RH1
7:121664812-121995065scaffold1430:1233706-1563959 in wrong orientation according to MGI1
7:126621157-127061513scaffold1566.1:468665-909021 in wrong orientation according to WI_MRC-RH1
7:127499342-128628375scaffold4477.0:435888-1564921 in wrong orientation according to MGI1
7:131127524-132449638scaffold5670.0:282256-1604370 in wrong orientation according to MGI1
7:132450038-132727313scaffold5670.0:4980-282255 in wrong orientation according to WI_MRC-RH1
7:133148050-133689348scaffold1505.0:1-541299 in wrong orientation according to WI_MRC-RH1
7:136559648-137167165scaffold2864:861516-1469033 in wrong orientation according to MGI1
7:140649766-141101809scaffold140:1920862-2372905 in wrong orientation according to MGI1
7:141220591-141462185scaffold140:2484339-2727616 in wrong orientation according to WI_MRC-RH2
7:145901923-146029297scaffold885:1-127375 in wrong orientation according to WI_MRC-RH1
7:147723006-149102488scaffold12642.0:118498-1497980 in wrong orientation according to MGI1
7:153218757-155104068scaffold428.1:1-1885312 in wrong orientation according to MGI1
7:156184200-156577851scaffold11320.0:1-393652 in wrong orientation according to MGI1
7:157997602-158006154C1125363:1-8553 in wrong orientation according to WI_MRC-RH1
7:158152103-158651259scaffold6182:996576-1495124 in wrong orientation according to MGI4
7:159641119-159827754scaffold6144:1-186636 in wrong orientation according to WI_MRC-RH1
7:159839028-160493882scaffold6144:186637-841491 in wrong orientation according to MGI1
7:160540313-160969264scaffold6144:885042-1313993 in wrong orientation according to MGI1

Chromosome: 8

RegionCommentComponents in FPC/Scaffold region
8:44886-568360scaffold2540.1:1-523475 in wrong orientation according to WI_MRC-RH1
8:1132218-1494525scaffold6460:1-362308 in wrong orientation according to MGI1
8:9551464-10662516scaffold8811:1-1111053 in wrong orientation according to MGI1
8:17273100-17752409scaffold275:499439-978748 in wrong orientation according to MGI1
8:37221479-37694055scaffold11402.0:435194-907770 in wrong orientation according to MGI1
8:42834949-43232148scaffold1034.3:495766-888273 in wrong orientation according to WI_MRC-RH4
8:50738653-51030731scaffold1538:1641615-1933693 in wrong orientation according to MGI1
8:57175189-57567115scaffold6236:291586-683512 in wrong orientation according to WI_MRC-RH1
8:64824382-65263510scaffold4874:364213-803341 in wrong orientation according to MGI1
8:75774340-75854666scaffold31631:453264-533590 in wrong orientation according to WI_MRC-RH1
8:76111243-76304148scaffold2821.1:246424-439329 in wrong orientation according to WI_MRC-RH1
8:76304672-76428122scaffold2821.1:439330-562780 in wrong orientation according to WI_MRC-RH1
8:77946773-78749424scaffold557:180680-983331 in wrong orientation according to MGI1
8:81163218-82074775scaffold751:6632-918189 in wrong orientation according to MGI1
8:85738060-86112284scaffold768:135177-509401 in wrong orientation according to WI_MRC-RH1
8:86913165-87615123scaffold9927.0:1-701959 in wrong orientation according to MGI1
8:87616057-87979897scaffold9927.0:701960-1065800 in wrong orientation according to WI_MRC-RH1
8:90459237-90634473scaffold5791:748194-923430 in wrong orientation according to WI_MRC-RH1
8:91193829-91913499scaffold30731:1-719671 in wrong orientation according to MGI1
8:91915802-92216675scaffold30731:719672-1020545 in wrong orientation according to MGI1
8:92217970-92351554scaffold30731:1020546-1154130 in wrong orientation according to WI_MRC-RH1
8:94214338-95751889scaffold3510:1-1537552 in wrong orientation according to MGI1
8:100013769-101272982scaffold7939.0:300903-1560116 in wrong orientation according to MGI1
8:103910511-104257861scaffold689.0:552292-899642 in wrong orientation according to WI_MRC-RH1
8:115678631-116544372scaffold1631:1121475-1987347 in wrong orientation according to MGI2
8:116545861-117120510scaffold1631:546825-1121474 in wrong orientation according to MGI1
8:117121325-117182015scaffold1631:486134-546824 in wrong orientation according to WI_MRC-RH1
8:117669751-117891735scaffold39999:1-221985 in wrong orientation according to WI_MRC-RH1
8:134031580-134247000scaffold3780.3:2614777-2836099 in wrong orientation according to WI_MRC-RH2
8:134247012-135420536scaffold1252.1:116-1173640 in wrong orientation according to WI_MRC-RH1
8:135440887-135637387scaffold6873.0:1-196501 in wrong orientation according to WI_MRC-RH1
8:135641959-135810953scaffold1247.3:415794-584788 in wrong orientation according to WI_MRC-RH1
8:139612921-140199032scaffold230.1:458305-1044416 in wrong orientation according to MGI1
8:140199990-140658162scaffold230.1:132-458304 in wrong orientation according to MGI1
8:141452064-142146073scaffold1694.2:249118-943127 in wrong orientation according to WI_MRC-RH1

Chromosome: 9

RegionCommentComponents in FPC/Scaffold region
9:4172674-4453015scaffold18604:36681-317022 in wrong orientation according to WI_MRC-RH1
9:4454948-4491627scaffold18604:1-36680 in wrong orientation according to WI_MRC-RH1
9:4627960-4837283scaffold18233:1-209324 in wrong orientation according to MGI1
9:5698229-6101969scaffold6115:1-403741 in wrong orientation according to WI_MRC-RH1
9:12325966-13289395scaffold627.1:1-963430 in wrong orientation according to MGI1
9:28461486-29553549scaffold9729.1:2649906-3741969 in wrong orientation according to MGI1
9:29869025-32209091scaffold9729.1:551-2340617 in wrong orientation according to MGI1
9:32209103-32999058scaffold9841.0:1-789956 in wrong orientation according to MGI1
9:33678107-34043842scaffold9841.1:661211-1026946 in wrong orientation according to WI_MRC-RH1
9:35504221-35966193scaffold4162.0:19899-481871 in wrong orientation according to WI_MRC-RH1
9:37111419-37340987scaffold2204:632573-867752 in wrong orientation according to MGI2
9:37648373-37988469scaffold2204:1-340097 in wrong orientation according to MGI1
9:40210060-40535521scaffold6609.1:543-326004 in wrong orientation according to WI_MRC-RH1
9:50322802-51610224scaffold6746.1:1-1287423 in wrong orientation according to MGI1
9:53172861-54061407scaffold14645:1-888547 in wrong orientation according to MGI1
9:55405803-56057889scaffold81:1-652087 in wrong orientation according to WI_MRC-RH1
9:56998919-57317098scaffold10786.0:426981-745160 in wrong orientation according to WI_MRC-RH1
9:62875773-63796168scaffold11362.1:1-921462 in wrong orientation according to MGI2
9:67119655-67497560scaffold5372:639007-1016912 in wrong orientation according to MGI1
9:70843607-72381954scaffold3808:1-1538348 in wrong orientation according to MGI1
9:75674984-77093137scaffold2032:1-1418154 in wrong orientation according to MGI1
9:77093694-77271981scaffold4831.0:1-178288 in wrong orientation according to WI_MRC-RH1
9:77544004-77939264scaffold13233:1-395261 in wrong orientation according to WI_MRC-RH1
9:79493849-80740074scaffold2540.0:1-1246226 in wrong orientation according to MGI1
9:80746495-81489231scaffold495:1425915-2168651 in wrong orientation according to MGI1
9:82071659-82914843scaffold495:1-843185 in wrong orientation according to MGI1
9:83834426-84376730scaffold989:63023-604022 in wrong orientation according to WI_MRC-RH3
9:96109379-96629170scaffold4752:1-519792 in wrong orientation according to MGI1
9:96842055-97054895scaffold893:1-212841 in wrong orientation according to WI_MRC-RH1
9:105776937-106471971scaffold471.1:1906740-2609443 in wrong orientation according to MGI2
9:106648769-107775710scaffold471.1:612076-1739017 in wrong orientation according to MGI1
9:113634450-114367849scaffold1153.1:1183212-1916611 in wrong orientation according to MGI1
9:114556552-115067484scaffold1153.1:498380-1009312 in wrong orientation according to WI_MRC-RH1
9:115068366-115298821scaffold1153.1:267924-498379 in wrong orientation according to MGI1
9:117662308-118167884scaffold5870:139202-644778 in wrong orientation according to WI_MRC-RH1
9:124360039-125186018scaffold1641:1-799446 in wrong orientation according to MGI7
9:125275305-125733693scaffold2466.1:1-460496 in wrong orientation according to WI_MRC-RH2
9:127090433-128017583scaffold2316:957284-1884434 in wrong orientation according to MGI1
9:128265611-129266812scaffold2609:116444-1124151 in wrong orientation according to MGI2
9:129975181-130940404scaffold187.1:1-965224 in wrong orientation according to MGI1
9:132680827-133292555scaffold1295:1-609546 in wrong orientation according to MGI3
9:134731485-134890612scaffold4164.1:216510-375637 in wrong orientation according to WI_MRC-RH1
9:134933774-135014480scaffold4164.1:94081-174787 in wrong orientation according to WI_MRC-RH1

Chromosome: X

RegionCommentComponents in FPC/Scaffold region
X:758782-886942scaffold6776:1-128161 in wrong orientation according to WI_MRC-RH1
X:969281-1228270scaffold1880.1:55063-314052 in wrong orientation according to WI_MRC-RH1
X:1232684-2031177scaffold1880.1:314053-1112546 in wrong orientation according to MGI1
X:2622556-2745489scaffold14449:1-122934 in wrong orientation according to WI_MRC-RH1
X:12573546-12763086scaffold5916:1-189541 in wrong orientation according to MGI1
X:16288339-17280796scaffold6530:1-992458 in wrong orientation according to MGI1
X:18739654-18925861scaffold4212.0:1-186208 in wrong orientation according to MGI1
X:58362126-58586581scaffold2113.2:1-224456 in wrong orientation according to WI_MRC-RH1
X:58594162-59138662scaffold2113.0:2010-546510 in wrong orientation according to WI_MRC-RH1
X:69048621-69397786scaffold1446:431913-781078 in wrong orientation according to MGI1
X:70958310-71292340scaffold10071:1-334031 in wrong orientation according to WI_MRC-RH1
X:72405014-72740628scaffold8198:39791-375405 in wrong orientation according to MGI1
X:73122807-73222220scaffold4428.2:1-99414 in wrong orientation according to WI_MRC-RH1
X:74217224-74460540scaffold4428.2:1079256-1322572 in wrong orientation according to WI_MRC-RH1
X:81457086-81570587scaffold20631.0:1-113502 in wrong orientation according to MGI1
X:94977887-95375023scaffold7177:4615-401751 in wrong orientation according to WI_MRC-RH1
X:95379097-95706161scaffold3286:358424-685488 in wrong orientation according to WI_MRC-RH1
X:95929056-96083172scaffold3286:1-154117 in wrong orientation according to MGI1
X:96642441-96798708scaffold8519.1:53084-209351 in wrong orientation according to WI_MRC-RH1
X:102915657-103374313scaffold2400:1-458657 in wrong orientation according to MGI1
X:103495071-103619336scaffold3450.1:117442-241707 in wrong orientation according to WI_MRC-RH1
X:106112130-106334281scaffold7693.1:1325353-1547504 in wrong orientation according to MGI1
X:106335491-106614099scaffold7693.1:1046744-1325352 in wrong orientation according to MGI1
X:135574447-135633961scaffold22911:1-59515 in wrong orientation according to WI_MRC-RH1
X:140048485-140245082scaffold3414.1:1-196598 in wrong orientation according to WI_MRC-RH1
X:141649382-141773581scaffold28552:1-124200 in wrong orientation according to WI_MRC-RH1
X:142291532-142495165scaffold1899:131989-335622 in wrong orientation according to MGI1
X:142569430-142613511scaffold11740.0:1-44082 in wrong orientation according to WI_MRC-RH1
X:145504752-145735644scaffold8200.1:396-231288 in wrong orientation according to WI_MRC-RH1
X:145735656-146677307scaffold232.1:114106-1055757 in wrong orientation according to MGI1
X:146793792-147155807scaffold3666:352102-714117 in wrong orientation according to WI_MRC-RH1
X:148776943-149049943scaffold6504.0:166987-439987 in wrong orientation according to WI_MRC-RH1
X:157004883-157160074scaffold29193.0:61530-216721 in wrong orientation according to WI_MRC-RH1
X:162115650-162261185scaffold4801.0:1-145536 in wrong orientation according to WI_MRC-RH1
X:169778568-170236446scaffold13014.0:939906-1397784 in wrong orientation according to WI_MRC-RH1
X:171880510-172206720scaffold6025.0:292084-618294 in wrong orientation according to WI_MRC-RH1
X:174323262-174499323scaffold3755.1:1-176062 in wrong orientation according to MGI1