Punchlist(s)

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Overview

Punch TypeDescriptionno of entries
Incomplete Transcripts
Incomplete coverage of transcript mappings2573
Incomplete Transcripts CCDS
Incomplete coverage of CCDS transcript mappings1128
Incomplete Transcripts lncRNA
Incomplete coverage of lncRNA transcript mappings1952
Bionano indels (A_J mouse strain)
List of insertions/deletions from bionano map of A_J mouse strain8266
Clone-contig wrong chr
Markers suggest all or part of a clone-contig may be on the wrong chromosome6
Clone-contig misordering
Markers suggest clone-contigs may be in the wrong order1987
Clone-contig misorientation
Markers suggest a clone-contig may be in the wrong orientation906
Transcript Organization (ccds)
Transcript Organization (ccds)644
Transcript Organization (lncRNA)
Transcript Organization (lncRNA)1603
Transcript Organization (refseq)
Transcript Organization (refseq)1874
Transcript Orphans
Near perfect transcript mappings not mapped on primary components93
Transcript Orphans CCDS
Near perfect CCDS transcript mappings not mapped on primary components60
Transcript Orphans lncRNA
Near perfect lncRNA transcript mappings not mapped on primary components70